AT5G64940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ABC2 homolog 13 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of ATH subfamily of ATP-binding cassette (ABC) proteins. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ABC2 homolog 13 (ATH13); FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G07700.2); Has 10051 Blast hits to 9997 proteins in 1795 species: Archae - 126; Bacteria - 4380; Metazoa - 442; Fungi - 487; Plants - 725; Viruses - 14; Other Eukaryotes - 3877 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:25949116..25953326 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86028.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.75 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 761 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATSSSSSSS LLLPNINFNS RQSPTITRSV SIAGIFLPRN RLSYNHNLRI RTRLIRASKD DNVAVEDRDN AVKINGDYNG SARLNGNGSA RKSVNGDFNG 101: SARLNGNGSL VKYVNGSVTV ETEEVTKKRK EEVRKKRVED IGQEDAWFKN NTQQKQVEVS VTPGGRWNRF KTYSTIQRTL EIWGFVVQFI FRTWLSNKKF 201: SYKGGMTEEK KVLRRKVLAK WLKENILRLG PTFIKIGQQF STRVDILPQE YVDQLSELQD QVPPFPSATA LSIVEEELGG SVEDIFDRFD YEPIAAASLG 301: QVHRARLKGQ EVVLKVQRPG LKDLFDIDLK NLRVIAEYLQ KVDPKSDGAK RDWVAIYDEC ASVLYQEIDY TKEAANSELF ANNFKDLEYV KVPSIYWEYT 401: TPQVLTMEYV PGIKINKIQA LDQLGVDRKR LGRYAVESYL EQILSHGFFH ADPHPGNIAV DDVNGGRLIF YDFGMMGSIS PNIREGLLEA FYGVYEKDPD 501: KVLQAMVQMG VLVPTGDLTA VRRTALFFLN SFEERLAAQR KEKEEIAAAE ELGFKKPLSK EEKQEKKKQR LAAIGEDLLA IAADQPFRFP ATFTFVVRAF 601: SVLDGIGKGL DPRFDITEIA KPYALELLRF REAGVEVVVK DLRKRWDRQS QAFYNLFRQA DRVEKLAVVI ERLEQGDLKL RVRALESERA FQRVAAVQKT 701: VGSAVAAGSL VNLATILYLN SIKTPATIAY TVCAFFSLQV LIGIIKVKKF DQREKLITGT A |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)