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AT5G64940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ABC2 homolog 13
Curator
Summary (TAIR10)
Encodes a member of ATH subfamily of ATP-binding cassette (ABC) proteins.
Computational
Description (TAIR10)
ABC2 homolog 13 (ATH13); FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G07700.2); Has 10051 Blast hits to 9997 proteins in 1795 species: Archae - 126; Bacteria - 4380; Metazoa - 442; Fungi - 487; Plants - 725; Viruses - 14; Other Eukaryotes - 3877 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-346-MONOMERBioCyc:ARA:GQT-347-MONOMEReggNOG:COG0661eggNOG:KOG1235EMBL:AY059877EMBL:AY064044EMBL:AY096382
EMBL:CP002688EnsemblPlants:AT5G64940EnsemblPlants:AT5G64940.1EnsemblPlants:AT5G64940.2entrez:836618GeneID:836618GO:GO:0005215
GO:GO:0006810GO:GO:0009507GO:GO:0009941GO:GO:0016021GO:GO:0034599GO:GO:0046467Gramene:AT5G64940.1
Gramene:AT5G64940.2hmmpanther:PTHR10566hmmpanther:PTHR10566:SF74HOGENOM:HOG000232481InterPro:IPR004147InterPro:IPR011009KEGG:ath:AT5G64940
ncoils:CoilOMA:AKKRWERPfam:PF03109PhylomeDB:Q93Y08Proteomes:UP000006548RefSeq:NP_201299.2RefSeq:NP_851271.1
SMR:Q93Y08STRING:3702.AT5G64940.1SUPFAM:SSF56112TAIR:AT5G64940tair10-symbols:ATATH13tair10-symbols:ATH13tair10-symbols:ATOSA1
tair10-symbols:OSA1TMHMM:TMhelixUniGene:At.73142UniGene:At.7853UniProt:Q93Y08
Coordinates (TAIR10) chr5:+:25949116..25953326
Molecular Weight (calculated) 86028.20 Da
IEP (calculated) 9.75
GRAVY (calculated) -0.32
Length 761 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSSSSSSS LLLPNINFNS RQSPTITRSV SIAGIFLPRN RLSYNHNLRI RTRLIRASKD DNVAVEDRDN AVKINGDYNG SARLNGNGSA RKSVNGDFNG
101: SARLNGNGSL VKYVNGSVTV ETEEVTKKRK EEVRKKRVED IGQEDAWFKN NTQQKQVEVS VTPGGRWNRF KTYSTIQRTL EIWGFVVQFI FRTWLSNKKF
201: SYKGGMTEEK KVLRRKVLAK WLKENILRLG PTFIKIGQQF STRVDILPQE YVDQLSELQD QVPPFPSATA LSIVEEELGG SVEDIFDRFD YEPIAAASLG
301: QVHRARLKGQ EVVLKVQRPG LKDLFDIDLK NLRVIAEYLQ KVDPKSDGAK RDWVAIYDEC ASVLYQEIDY TKEAANSELF ANNFKDLEYV KVPSIYWEYT
401: TPQVLTMEYV PGIKINKIQA LDQLGVDRKR LGRYAVESYL EQILSHGFFH ADPHPGNIAV DDVNGGRLIF YDFGMMGSIS PNIREGLLEA FYGVYEKDPD
501: KVLQAMVQMG VLVPTGDLTA VRRTALFFLN SFEERLAAQR KEKEEIAAAE ELGFKKPLSK EEKQEKKKQR LAAIGEDLLA IAADQPFRFP ATFTFVVRAF
601: SVLDGIGKGL DPRFDITEIA KPYALELLRF REAGVEVVVK DLRKRWDRQS QAFYNLFRQA DRVEKLAVVI ERLEQGDLKL RVRALESERA FQRVAAVQKT
701: VGSAVAAGSL VNLATILYLN SIKTPATIAY TVCAFFSLQV LIGIIKVKKF DQREKLITGT A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)