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AT5G64840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : general control non-repressible 5
Curator
Summary (TAIR10)
member of GCN subfamily
Computational
Description (TAIR10)
general control non-repressible 5 (GCN5); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT5G09930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21849eggNOG:COG0488eggNOG:KOG0927EMBL:AB019236EMBL:AK227200EMBL:AY056435EMBL:BT000510
EMBL:CP002688EnsemblPlants:AT5G64840EnsemblPlants:AT5G64840.1entrez:836607Gene3D:3.40.50.300GeneID:836607Genevisible:Q9LV93
GO:GO:0005215GO:GO:0005524GO:GO:0009624GO:GO:0016887Gramene:AT5G64840.1hmmpanther:PTHR19211hmmpanther:PTHR19211:SF48
HOGENOM:HOG000271638InParanoid:Q9LV93InterPro:IPR003439InterPro:IPR003593InterPro:IPR017871InterPro:IPR027417InterPro:IPR032781
iPTMnet:Q9LV93KEGG:ath:AT5G64840ncoils:CoilOMA:ARIMAKPPaxDb:Q9LV93Pfam:PF00005Pfam:PF12848
Pfam:Q9LV93Pfscan:PS50893PhylomeDB:Q9LV93PRIDE:Q9LV93PRO:PR:Q9LV93PROSITE:PS00211PROSITE:PS50893
ProteinModelPortal:Q9LV93Proteomes:UP000006548RefSeq:NP_201289.1scanprosite:PS00211SMART:SM00382SMR:Q9LV93STRING:3702.AT5G64840.1
SUPFAM:SSF52540TAIR:AT5G64840tair10-symbols:ATGCN5tair10-symbols:GCN5UniGene:At.7843UniProt:Q9LV93
Coordinates (TAIR10) chr5:-:25916956..25919693
Molecular Weight (calculated) 78005.50 Da
IEP (calculated) 6.81
GRAVY (calculated) -0.54
Length 692 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLSTNLHSL DLRSTFFTGL RTSPIPSNFI KISSISNPRR DISTIRAQVS TISLETSVKQ RQDEIESLFS KQPSQQDSDR KRNGKSSKNG ASGISSGVKL
101: ENIRKSYKGV TVLKDVTWEV KRGEKVGLVG VNGAGKTTQL RIITGQEEPD SGNVIKAKPN MKVAFLSQEF EVSMSKTVRE EFMTAFKEEM EITEKLEKVQ
201: KAIEGSVDDL DLMGRLLDEF DLLQRRAQAV NLDSVDAKIS KLMPELGFAP EDADRLVASF SGGWQMRMSL GKILLQDPDL LLLDEPTNHL DLDTIEWLEG
301: YLQKQDVPMV IISHDRAFLD QLCTKIVETE MGVSRTFEGN YSQYVISKAE WIETQNAAWE KQQKDIDSTK DLIARLGAGA NSGRASTAEK KLEKLQEQEL
401: IEKPFQRKQM KIRFPERGTS GRSVVNVKNI DFGFEDKMLF KKANLSIERG EKIAILGPNG CGKSTLLKLI MGLEKPVKGE VILGEHNVLP NYFEQNQAEV
501: LDLDKTVLET VCEAAEDWRS DDIKGLLGRC NFKADMLDRK VSLLSGGEKA RLAFCKFMVT PSTLLVLDEP TNHLDIPSKE MLEEAINEYQ GTVIAVSHDR
601: YFIKQIVNRV IEVEDGCLED YAGDYNYYLE KNLDARTKEL EREAELEEKA PKVKAKSKMS KAEKEARKKQ KMQAFQQAKQ KSKASKNSKR WN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)