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AT5G64760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:14623891 (2004): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : regulatory particle non-ATPase subunit 5B
Curator
Summary (TAIR10)
Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous genes RPN5a.
Computational
Description (TAIR10)
regulatory particle non-ATPase subunit 5B (RPN5B); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit, putative (RPN5) (TAIR:AT5G09900.1); Has 840 Blast hits to 830 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 302; Fungi - 291; Plants - 115; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
Protein Annotations
BioGrid:21839eggNOG:COG5071eggNOG:KOG1498EMBL:AB025637EMBL:AY062093EMBL:AY062113EMBL:AY124872
EMBL:AY230833EMBL:CP002688EnsemblPlants:AT5G64760EnsemblPlants:AT5G64760.1entrez:836597ExpressionAtlas:Q8VWK0Gene3D:1.10.10.10
GeneID:836597Genevisible:Q8VWK0GO:GO:0000502GO:GO:0005634GO:GO:0005737GO:GO:0007275GO:GO:0008541
GO:GO:0030163GO:GO:0031595GO:GO:0043161hmmpanther:PTHR10855hmmpanther:PTHR10855:SF1HOGENOM:HOG000194265IntAct:Q8VWK0
InterPro:IPR000717InterPro:IPR011991OMA:CWFLALAPaxDb:Q8VWK0Pfam:PF01399Pfam:Q8VWK0PRIDE:Q8VWK0
PRO:PR:Q8VWK0ProteinModelPortal:Q8VWK0Proteomes:UP000006548Reactome:R-ATH-1236978Reactome:R-ATH-174184Reactome:R-ATH-349425Reactome:R-ATH-5632684
Reactome:R-ATH-68949Reactome:R-ATH-69017Reactome:R-ATH-983168RefSeq:NP_568994.2SMART:SM00088SMR:Q8VWK0STRING:3702.AT5G64760.1
SUPFAM:SSF46785TAIR:AT5G64760tair10-symbols:RPN5BUniGene:At.27199UniGene:At.71233UniProt:Q8VWK0
Coordinates (TAIR10) chr5:-:25894027..25896445
Molecular Weight (calculated) 51120.60 Da
IEP (calculated) 7.14
GRAVY (calculated) -0.30
Length 442 amino acids
Sequence (TAIR10)
(BLAST)
001: MEESRQLESS IDRLLNEEKQ MRLAENVAGT RKAATEILKL CFEAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTLDIETRIE LIKTLNNVAA
101: GKIYVEIERA RLTKMLAKIK EEQGLIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDQKDFVRAQ ILSRKINPRV FDADTTKEKK KPKEGENMVE
201: EAPADIPTLL VLKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKENP EQWIPVLRKI CWFLALAPHD PMQSSLLNAT LEDKKLSEIP DFKMLLKQIV
301: TMEVIQWTSL WNKYKDEFEN EKNMIGGSLG DKAGEDLKLR IIEHNILVVS KYYSRITFKR LAELLCLTTE EAEKHLSEMV VSKALIAKID RPSGIICFQI
401: VKDSNEILNS WATNLEKLLD LVEKSCHQIH KETMVHKVAL RA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)