AT5G64580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AAA-type ATPase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, metalloendopeptidase activity, nucleotide binding, ATP binding; INVOLVED IN: embryo development; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 43409 Blast hits to 41131 proteins in 3311 species: Archae - 1622; Bacteria - 19384; Metazoa - 4934; Fungi - 3903; Plants - 3224; Viruses - 61; Other Eukaryotes - 10281 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:25817391..25821465 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 96859.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.54 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 855 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTFYISSSLT PTHFSKPLNP SNTLFPSQFR GSLSSFVRRR KPTEAKLSSK FNLFPSRRNG LITCCSTSSF ESTESSVSQE EDAESNRLFE KLRETERERL 101: SNMEELERKA NVQLERQLVM ASDWSRTLLT MRGKLKGTEW DPETSHRINF SDFMKLLDSN SVQYMEYSNY GQTISVILPY YKDGEPLGEE EDSKKEIIFR 201: RHIVDRMPID GWNDVWKKLH QQIVNVEVFN VDVVPAEVYT TVATFVVWSM RLALFVSLYV WIDSITRPIY AKLIPCDLGT PTKKIRQPLK RQALGSLGKS 301: RAKFISAEEK TGVTFDDFAG QEYIKRELQE IVRILKNDEE FQNKGIYCPK GVLLHGPPGT GKTLLAKAIA GEAGLPFFAA NGTDFVEMFV GVAASRVKDL 401: FASSRSYAPS IIFIDEIDAI GSKRGGPDIG GGGAEREQGL LQILTEMDGF KVTTSQVLVI GATNRLDILD PALLRKGRFD KIIRVGLPSK DGRLAILKVH 501: ARNKFFRSED EKEELLQEVA ENTEDFTGAE LQNVLNEAGI LTARKDLDYI GREELLEALK RQKGTFETGQ EDSTEVPEEL KLRLAYREAA VAVLACYLPD 601: QYRPISETDI NSIRSQPNMR YSETSGRVFA RKSDYVNSII RACAPRVVEE EMFGIENLCW ISAKSTLEAS QRAEFLILQT GMTAFGKAYY RNQRDLVPNL 701: VPKLEALRDE YMRFAVEKCS SILQEYQSAL EEITDVLLEK GEIKADEIWN IYNTAPRIPQ KPVRPVDEYG ALIYAGRWGI HGVSLPGRVT FSPGNIGFAT 801: FGAPRPMETQ IISDDTWKLV DEIWDKKVEE IKAEAVIQIE EEKKKPQILM ATHFF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)