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AT5G64580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:22923678 (2012): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AAA-type ATPase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, metalloendopeptidase activity, nucleotide binding, ATP binding; INVOLVED IN: embryo development; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 43409 Blast hits to 41131 proteins in 3311 species: Archae - 1622; Bacteria - 19384; Metazoa - 4934; Fungi - 3903; Plants - 3224; Viruses - 61; Other Eukaryotes - 10281 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0465eggNOG:KOG0731EMBL:AB010076EMBL:AY080633EMBL:CP002688EnsemblPlants:AT5G64580EnsemblPlants:AT5G64580.1
entrez:836579Gene3D:3.40.50.300GeneID:836579Genevisible:F4KF14GO:GO:0004176GO:GO:0005524GO:GO:0005739
GO:GO:0006508GO:GO:0008237GO:GO:0009507GO:GO:0009535GO:GO:0009536GO:GO:0009793GO:GO:0009941
GO:GO:0016021Gramene:AT5G64580.1hmmpanther:PTHR23076hmmpanther:PTHR23076:SF49HOGENOM:HOG000030533InParanoid:F4KF14IntAct:F4KF14
InterPro:IPR003593InterPro:IPR003959InterPro:IPR003960InterPro:IPR027417KEGG:ath:AT5G64580ncoils:CoilOMA:RHVVDRM
PaxDb:F4KF14Pfam:PF00004PRIDE:F4KF14ProMEX:F4KF14PROSITE:PS00674ProteinModelPortal:F4KF14Proteomes:UP000006548
RefSeq:NP_201263.2scanprosite:PS00674SMART:SM00382SMR:F4KF14STRING:3702.AT5G64580.1SUPFAM:SSF140990SUPFAM:SSF52540
TAIR:AT5G64580UniGene:At.28951UniProt:F4KF14
Coordinates (TAIR10) chr5:-:25817391..25821465
Molecular Weight (calculated) 96859.80 Da
IEP (calculated) 5.54
GRAVY (calculated) -0.36
Length 855 amino acids
Sequence (TAIR10)
(BLAST)
001: MTFYISSSLT PTHFSKPLNP SNTLFPSQFR GSLSSFVRRR KPTEAKLSSK FNLFPSRRNG LITCCSTSSF ESTESSVSQE EDAESNRLFE KLRETERERL
101: SNMEELERKA NVQLERQLVM ASDWSRTLLT MRGKLKGTEW DPETSHRINF SDFMKLLDSN SVQYMEYSNY GQTISVILPY YKDGEPLGEE EDSKKEIIFR
201: RHIVDRMPID GWNDVWKKLH QQIVNVEVFN VDVVPAEVYT TVATFVVWSM RLALFVSLYV WIDSITRPIY AKLIPCDLGT PTKKIRQPLK RQALGSLGKS
301: RAKFISAEEK TGVTFDDFAG QEYIKRELQE IVRILKNDEE FQNKGIYCPK GVLLHGPPGT GKTLLAKAIA GEAGLPFFAA NGTDFVEMFV GVAASRVKDL
401: FASSRSYAPS IIFIDEIDAI GSKRGGPDIG GGGAEREQGL LQILTEMDGF KVTTSQVLVI GATNRLDILD PALLRKGRFD KIIRVGLPSK DGRLAILKVH
501: ARNKFFRSED EKEELLQEVA ENTEDFTGAE LQNVLNEAGI LTARKDLDYI GREELLEALK RQKGTFETGQ EDSTEVPEEL KLRLAYREAA VAVLACYLPD
601: QYRPISETDI NSIRSQPNMR YSETSGRVFA RKSDYVNSII RACAPRVVEE EMFGIENLCW ISAKSTLEAS QRAEFLILQT GMTAFGKAYY RNQRDLVPNL
701: VPKLEALRDE YMRFAVEKCS SILQEYQSAL EEITDVLLEK GEIKADEIWN IYNTAPRIPQ KPVRPVDEYG ALIYAGRWGI HGVSLPGRVT FSPGNIGFAT
801: FGAPRPMETQ IISDDTWKLV DEIWDKKVEE IKAEAVIQIE EEKKKPQILM ATHFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)