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AT5G64500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G22730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0477eggNOG:KOG1330EMBL:AB010076EMBL:AB025640EMBL:AY034956EMBL:BT001973EMBL:CP002688
EnsemblPlants:AT5G64500EnsemblPlants:AT5G64500.1entrez:836571GeneID:836571Genevisible:Q9FLG8GO:GO:0005765GO:GO:0006869
GO:GO:0016021GO:GO:0031902GO:GO:0055085Gramene:AT5G64500.1hmmpanther:PTHR23505hmmpanther:PTHR23505:SF21HOGENOM:HOG000265160
InParanoid:Q9FLG8InterPro:IPR011701InterPro:IPR020846KEGG:ath:AT5G64500OMA:YTCVYTAPaxDb:Q9FLG8Pfam:PF07690
Pfam:Q9FLG8Pfscan:PS50850PhylomeDB:Q9FLG8PRIDE:Q9FLG8PRO:PR:Q9FLG8PROSITE:PS50850ProteinModelPortal:Q9FLG8
Proteomes:UP000006548RefSeq:NP_201255.1STRING:3702.AT5G64500.1SUPFAM:SSF103473TAIR:AT5G64500TMHMM:TMhelixUniGene:At.19158
UniProt:Q9FLG8
Coordinates (TAIR10) chr5:+:25780511..25783474
Molecular Weight (calculated) 52158.30 Da
IEP (calculated) 4.79
GRAVY (calculated) 0.54
Length 484 amino acids
Sequence (TAIR10)
(BLAST)
001: MDVDGEGDRG QNPRIMERDS DSIKDPISEP SWFTPKKLLF VFCVVNLINY IDRGAIASNG INGSRGSCTS SGTCSSGSGI QGDFNLSNFE DGVLSSAFMV
101: GLLVASPIFA SLAKSVNPFR LIGVGLSIWT LAVIGCGLSF DFWSITICRM FVGVGEASFV SLAAPFIDDN APHDQKSAWL AVFYMCIPTG YAFGYVYGGV
201: VGSVLPWRAA FWGEAILMLP FAVLGFVIKP LHLKGFAPDD TGKPRTDNLN VLPVGYGFSA VMKDLKLLLV DKVYVTNILG YIAYNFVLGA YSYWGPKAGY
301: NIYKMENADM IFGGVTVVCG IVGTLSGGVI LDYMDATISN AFKVLSVSTF IGAIFCFAAF CFKSMYAFLA LFAVGELLVF ATQGPVNFIV LHCVKPSLRP
401: LAMAMSTVSI HIFGDVPSSP LVGVLQDYVN NWRVTSLVLT FVLFPAAAIW SIGIFLNSVD RYNEDSEPDA VTRESTAAPL LQEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)