AT5G64500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G22730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:25780511..25783474 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52158.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.79 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.54 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 484 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDVDGEGDRG QNPRIMERDS DSIKDPISEP SWFTPKKLLF VFCVVNLINY IDRGAIASNG INGSRGSCTS SGTCSSGSGI QGDFNLSNFE DGVLSSAFMV 101: GLLVASPIFA SLAKSVNPFR LIGVGLSIWT LAVIGCGLSF DFWSITICRM FVGVGEASFV SLAAPFIDDN APHDQKSAWL AVFYMCIPTG YAFGYVYGGV 201: VGSVLPWRAA FWGEAILMLP FAVLGFVIKP LHLKGFAPDD TGKPRTDNLN VLPVGYGFSA VMKDLKLLLV DKVYVTNILG YIAYNFVLGA YSYWGPKAGY 301: NIYKMENADM IFGGVTVVCG IVGTLSGGVI LDYMDATISN AFKVLSVSTF IGAIFCFAAF CFKSMYAFLA LFAVGELLVF ATQGPVNFIV LHCVKPSLRP 401: LAMAMSTVSI HIFGDVPSSP LVGVLQDYVN NWRVTSLVLT FVLFPAAAIW SIGIFLNSVD RYNEDSEPDA VTRESTAAPL LQEA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)