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AT5G64490.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.778
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 22 (TAIR:AT1G01410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:836570eggNOG:COG5099eggNOG:KOG2049EMBL:AB025640
EMBL:BT004172EMBL:BT005092EMBL:CP002688EnsemblPlants:AT5G64490
EnsemblPlants:AT5G64490.1entrez:836570Gene3D:1.25.10.10GeneID:836570
Genevisible:Q9FGE7GO:GO:0003723GO:GO:0005737GO:GO:0006417
Gramene:AT5G64490.1InterPro:IPR011989InterPro:IPR016024iPTMnet:Q9FGE7
KEGG:ath:AT5G64490PaxDb:Q9FGE7Pfam:Q9FGE7PhylomeDB:Q9FGE7
PRIDE:Q9FGE7PRO:PR:Q9FGE7ProteinModelPortal:Q9FGE7Proteomes:UP000006548
RefSeq:NP_201254.1STRING:3702.AT5G64490.1SUPFAM:SSF48371TAIR:AT5G64490
UniGene:At.28957UniProt:Q9FGE7
Coordinates (TAIR10) chr5:-:25779676..25780239
Molecular Weight (calculated) 21010.70 Da
IEP (calculated) 8.09
GRAVY (calculated) 0.24
Length 187 amino acids
Sequence (TAIR10)
(BLAST)
001: MLNLDFTHKT TQATPRLHAV ATEFLRVSND VAELHKLSSK LTSDPYLFVE FVKTIRGFLS VQTALGLSGE IDTVFLQVIK GWFPDLITET FSFLIVVRII
101: NLFNKRANSK VYPDILRRIG NNALYLTRNP LRGICLVEKA INVRDPDCTV FIALKLHSHY VELSFEELGS NIVEKLLSVG ESGICGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)