AT5G64420.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : DNA polymerase V family | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DNA polymerase V family; FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding; INVOLVED IN: DNA replication, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase V (InterPro:IPR007015); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:25756416..25761122 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 146123.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.98 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||
| Length | 1306 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGSKKRSNDD STELVENDNL PDSSIVKKKK SKTEKMNTVA NYDSDTAAAA AEVPGVASSG KDMEKKKMRK ASDKQRRLEA ALKKNNGVGA SRPKPIPVAV 0101: NSNSDEADDE SLPSAAASSS SLPLNYFTDL ASSDASVREA AAESLVLRLQ EIQKQYEMLP DKESVDGGLM LEAEKNDGLD NCAPHLRYAL RRLIRGVSSS 0201: RECARQGFAL GLTLPVSVIS SINVESLLNL IADSLSVSSS MTGQDIKECL LGRLFAYGAL ARSGRLIEDW QSDKDSPIIK EFTNALIGLA AKKRYLQEPA 0301: VHILLDFVDK LPTEPVVTHV MEAPELYKWF EQATEVGNPD ALLLALKLHE KVSVDHPIFS KLLPVPFSSG KFFSADHLTA IGNCLKESTF CQPRVHSLWP 0401: VIVDMLLPEA VVQSEDVVSV SSSSKKQKRN RKSNPVEEEA TNNIRNFCEV FMEGDLLSST HVRKHLAFDI LLLLLPKLPA SFIQHVLSLK FVQCLMDILS 0501: TKDSWLHKVA THFLVELMDW VKDDDTKRVA VTMALQKHSE GKFDNITRTK TVKVLAAELE TEDGCTLYLQ NLMNLFVDEQ HVPEESSNMK WSLEPCSLNS 0601: DQSQTTDDNS DNGSNEEKDS VGTTGNSDVL KSWVIESLPG ILKHAKLSPE AKLRLQKQIL KFLAVQGLFL ASLGTEVTSF ELQEKFKWPK TATPAALCQM 0701: CIEQLQLLLS NSQKIEKPLS KGNALEQPDD PVSYFMKFLS TLQNIPSVSL FRSLNEADEK AFKELQETES KLLKEERNCG LSTDPNKFHA LRHLVVQLLL 0801: QILLHPGEFS EAATELSVCC DKAFSSLDLL KSDGQGEADD EEEPAVMDVL VDTLLSLLPH SSAPMRSSIE QVFKYFCQDV TNDGLLRMLR VIKKDLKPSR 0901: HQEDQDSDDL DDDEEDCLAI EDAEEENEEM GETGESDEQT DDSEAVTGVV PMAVDREVPE NSDDSDDDDG MDDDAMFRMD TYLAQIFKEK RNQAGGETAQ 1001: SQLVLFKLRV LSLLEIYLHE NSDKPQVMTV YLNLVQAMLN PSTAESSLPL LQRIWGIIQK KIFKAKEFPK DESMEFSALA SLLEKNLKLA AKPFKSKKSG 1101: VDPSKKKQSA AWNRYKMITH LGQNSTYWVM KIIDSRKFSE TELEKILDVF RSAVTGYFDS RKSQLKIDFL EEVFRRRPWI GHQLFGFLLE ASVNANVEFR 1201: RLEALDLITE TLRSLIPINE NTQADSRKTM TTHLKELILL IKELVGNMPE AKVRRAQVRK FCGRIFQMVS SLKLTKSFLK GLGQDGRTAC EDAFGDLFLN 1301: LKNTEH |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)