suba logo
AT5G64400.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41126E7eggNOG:KOG4090EMBL:AB008268EMBL:AY034898EMBL:AY063045EMBL:CP002688EnsemblPlants:AT5G64400
EnsemblPlants:AT5G64400.1entrez:836561ExpressionAtlas:Q9FME9GeneID:836561Gramene:AT5G64400.1hmmpanther:PTHR13523HOGENOM:HOG000194088
IntAct:Q9FME9InterPro:IPR010625OMA:ECRRNSMPfam:PF06747PhylomeDB:Q9FME9Proteomes:UP000006548RefSeq:NP_201245.1
STRING:3702.AT5G64400.2TAIR:AT5G64400UniGene:At.22499UniProt:Q9FME9
Coordinates (TAIR10) chr5:+:25748922..25750182
Molecular Weight (calculated) 14405.00 Da
IEP (calculated) 9.46
GRAVY (calculated) -0.18
Length 144 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRRSSGGRS APRPRPAAAR SPAPQPVHRA PPPAPAQASG GGGGMFSGIG STIAQGMAFG TGSAVAHRAV DSVMGPRTIQ HEAVEAASAS AAPAGSAMLS
101: STCDIHAKAF QDCIGSYGSE ISKCQFYMDM LSECRKNSGS VIGA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)