suba logo
AT5G64290.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:22923678 (2012): plastid
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:16618929 (2006): unclear
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : dicarboxylate transport 2.1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
dicarboxylate transport 2.1 (DIT2.1); FUNCTIONS IN: oxoglutarate:malate antiporter activity; INVOLVED IN: malate transport, response to nematode; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/sulphate symporter (InterPro:IPR001898); BEST Arabidopsis thaliana protein match is: dicarboxylate transporter 2.2 (TAIR:AT5G64280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21792eggNOG:COG0471eggNOG:ENOG410IK3CEMBL:AB008268EMBL:AY056329EMBL:BT000654EMBL:BT015925
EMBL:CP002688EnsemblPlants:AT5G64290EnsemblPlants:AT5G64290.1entrez:836550GeneID:836550Genevisible:Q9FMF7GO:GO:0005313
GO:GO:0006814GO:GO:0009507GO:GO:0009534GO:GO:0009536GO:GO:0009624GO:GO:0009706GO:GO:0009941
GO:GO:0015131GO:GO:0015140GO:GO:0015729GO:GO:0015813GO:GO:0016020GO:GO:0016021GO:GO:0019676
GO:GO:0071423GO:GO:0089711GO:GO:1902356Gramene:AT5G64290.1hmmpanther:PTHR10283hmmpanther:PTHR10283:SF106HOGENOM:HOG000117912
InParanoid:Q9FMF7IntAct:Q9FMF7InterPro:IPR001898KEGG:ath:AT5G64290OMA:MWVALASPaxDb:Q9FMF7Pfam:PF00939
Pfam:Q9FMF7PhylomeDB:Q9FMF7PRIDE:Q9FMF7PRO:PR:Q9FMF7ProteinModelPortal:Q9FMF7Proteomes:UP000006548RefSeq:NP_201234.1
SABIO-RK:Q9FMF7SMR:Q9FMF7STRING:3702.AT5G64290.1SwissPalm:Q9FMF7TAIR:AT5G64290tair10-symbols:DCTtair10-symbols:DIT2.1
TIGRfam:TIGR00785TIGRFAMs:TIGR00785TMHMM:TMhelixUniGene:At.23729UniGene:At.75001UniProt:Q9FMF7
Coordinates (TAIR10) chr5:-:25714495..25716642
Molecular Weight (calculated) 59994.80 Da
IEP (calculated) 9.62
GRAVY (calculated) 0.61
Length 563 amino acids
Sequence (TAIR10)
(BLAST)
001: MESFALHSLS TTATSTLLSH HHHHHPSRLS LLRRTSSRSP PSTISLRSLS VQPLSFPLLK PIPRFSTRIA AAPQDNAPPP PPPSPSPSPS PQGAKLIPLI
101: LSISVGLILR FAVPVPEGVT PQGWQLLSIF LSTIAGLVLS PLPVGAWAFI GLTASIVTKT LSFSAAFSAF TSEVIWLIVI SFFFARGFVK TGLGDRIATY
201: FVKWLGKSTL GLSYGLTLSE ALIAPAMPST TARAGGIFLP IIKSLSLSAG SKPNDSSSRK LGSYLIQSQF QCAGNSSALF LTAAAQNLLC LKLAEELGVV
301: ISNPWVSWFK AASLPAIISL LCTPLILYKL YPPETKDTPE APGIAATKLK QMGPVTKNEW IMVGTMLLAV TLWICGETLG IPSVVAAMIG LSILLVLGVL
401: NWDDCLSEKS AWDTLAWFAV LVGMAGQLTN LGVVTWMSDC VAKVLQSLSL SWPAAFGLLQ AAYFFIHYLF ASQTGHVGAL FSAFLAMHIA AGVPGILAAL
501: ALAYNTNLFG ALTHYSSGQA AVYYGAGYVD LPDVFKIGFV MATINAIIWG VVGTFWWKFL GLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)