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AT5G64260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22430844 (2012): Golgi
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:21109274 (2011): extracellular region
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : EXORDIUM like 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EXORDIUM like 2 (EXL2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphate-induced protein 1 (InterPro:IPR006766); BEST Arabidopsis thaliana protein match is: EXORDIUM like 4 (TAIR:AT5G09440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21789eggNOG:ENOG410INUMeggNOG:ENOG41107QFEMBL:AB008268
EMBL:AF326891EMBL:AF339708EMBL:AF380638EMBL:AY057739
EMBL:AY087652EMBL:CP002688EnsemblPlants:AT5G64260EnsemblPlants:AT5G64260.1
entrez:836547GeneID:836547Genevisible:Q9FE06GO:GO:0005615
GO:GO:0005618GO:GO:0005794GO:GO:0005829GO:GO:0009505
GO:GO:0009506GO:GO:0048046Gramene:AT5G64260.1hmmpanther:PTHR31279
hmmpanther:PTHR31279:SF12HOGENOM:HOG000239502IntAct:Q9FE06InterPro:IPR006766
KEGG:ath:AT5G64260OMA:FCVSRCGPaxDb:Q9FE06Pfam:PF04674
Pfam:Q9FE06PhylomeDB:Q9FE06PRIDE:Q9FE06PRO:PR:Q9FE06
Proteomes:UP000006548RefSeq:NP_201231.1STRING:3702.AT5G64260.1TAIR:AT5G64260
tair10-symbols:EXL2TMHMM:TMhelixUniGene:At.23633UniGene:At.67053
UniGene:At.71435UniProt:Q9FE06
Coordinates (TAIR10) chr5:+:25703980..25704897
Molecular Weight (calculated) 32676.20 Da
IEP (calculated) 9.70
GRAVY (calculated) 0.01
Length 305 amino acids
Sequence (TAIR10)
(BLAST)
001: MASNYRFAIF LTLFFATAGF SAAALVEEQP LVMKYHNGVL LKGNITVNLV WYGKFTPIQR SVIVDFIHSL NSKDVASSAA VPSVASWWKT TEKYKGGSST
101: LVVGKQLLLE NYPLGKSLKN PYLRALSTKL NGGLRSITVV LTAKDVTVER FCMSRCGTHG SSGSNPRRAA NGAAYVWVGN SETQCPGYCA WPFHQPIYGP
201: QTPPLVAPNG DVGVDGMIIN LATLLANTVT NPFNNGYYQG PPTAPLEAVS ACPGIFGSGS YPGYAGRVLV DKTTGSSYNA RGLAGRKYLL PAMWDPQSST
301: CKTLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)