AT5G64250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.532 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Aldolase-type TIM barrel family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Aldolase-type TIM barrel family protein; FUNCTIONS IN: oxidoreductase activity, catalytic activity, nitronate monooxygenase activity; INVOLVED IN: response to cadmium ion, response to symbiotic fungus, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), 2-nitropropane dioxygenase, NPD (InterPro:IPR004136); Has 10289 Blast hits to 10274 proteins in 2024 species: Archae - 22; Bacteria - 7122; Metazoa - 23; Fungi - 533; Plants - 70; Viruses - 0; Other Eukaryotes - 2519 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:25697623..25698752 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32092.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.66 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||
| Length | 293 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNQECPDYLR ELIRKTKTLT EKPFGIGVVL AFPHDLNIKT ILEEKVAVLQ LYWGDCSQEL VDDAHFAGVK VIPQVGNVEE ARKAVAVGVD AIIVQGREAG 101: GHVIGKDGLF SLLPRVVDLV GERDIPVIAA GGIVDGRGYV AALSLGAQGV CLGTRFVATH ESYAHPIYKR KLIEYEKTEY TDVFGRARWP GAPQRVLETP 201: FFDDWRSLPA HENEVNQPII GRSTIHGVEK EIRRFSGTVP NMTTTGDLES MAMYAGQSVG LIKEILPAGE VVKSLVEEAQ ALILQKFNNA TTT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)