AT5G64240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.552 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : metacaspase 3 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
metacaspase 3 (MC3); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 1 (TAIR:AT1G02170.1); Has 1094 Blast hits to 1088 proteins in 266 species: Archae - 4; Bacteria - 271; Metazoa - 0; Fungi - 282; Plants - 308; Viruses - 0; Other Eukaryotes - 229 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:25695836..25696923 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34617.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.86 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||
| Length | 305 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASRREVRCR CGRRMWVQPD ARTVQCSTCH TVTQLYSLVD IARGANRIIH GFQQLLRQHQ PQHHEQQQQQ MMAQPPPRLL EPLPSPFGKK RAVLCGVNYK 101: GKSYSLKGCI SDAKSMRSLL VQQMGFPIDS ILMLTEDEAS PQRIPTKRNI RKAMRWLVEG NRARDSLVFH FSGHGSQQND YNGDEIDGQD EALCPLDHET 201: EGKIIDDEIN RILVRPLVHG AKLHAVIDAC NSGTVLDLPF ICRMERNGSY EWEDHRSVRA YKGTDGGAAF CFSACDDDES SGYTPVCFHY IIHHHATKHT 301: YLSVC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)