suba logo
AT5G64200.2
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ortholog of human splicing factor SC35
Curator
Summary (TAIR10)
encodes an SC35-like splicing factor of 35 kD localized to the nuclear specks.
Computational
Description (TAIR10)
ortholog of human splicing factor SC35 (SC35); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: cytosol, nuclear speck, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 30A (TAIR:AT3G13570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21783eggNOG:ENOG4111NJ8eggNOG:KOG4207EMBL:AB008268EMBL:AY063890EMBL:AY122917EMBL:AY127004
EMBL:AY143851EMBL:CP002688EnsemblPlants:AT5G64200EnsemblPlants:AT5G64200.1EnsemblPlants:AT5G64200.2entrez:836541Gene3D:3.30.70.330
GeneID:836541Genevisible:Q9FMG4GO:GO:0000166GO:GO:0000398GO:GO:0003723GO:GO:0005681GO:GO:0005829
GO:GO:0008380GO:GO:0016020GO:GO:0016607Gramene:AT5G64200.1Gramene:AT5G64200.2hmmpanther:PTHR23147hmmpanther:PTHR23147:SF10
HOGENOM:HOG000276233InParanoid:Q9FMG4InterPro:IPR000504InterPro:IPR003954InterPro:IPR012677iPTMnet:Q9FMG4KEGG:ath:AT5G64200
KO:K12891OMA:DKRSNERPaxDb:Q9FMG4Pfam:PF00076Pfam:Q9FMG4Pfscan:PS50102PRIDE:Q9FMG4
PRO:PR:Q9FMG4PROSITE:PS50102ProteinModelPortal:Q9FMG4Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72165Reactome:R-ATH-72187
RefSeq:NP_201225.1RefSeq:NP_851261.1SMART:SM00360SMART:SM00361SMR:Q9FMG4STRING:3702.AT5G64200.1SUPFAM:SSF54928
TAIR:AT5G64200tair10-symbols:At-SC35tair10-symbols:ATSC35tair10-symbols:SC35UniGene:At.23698UniGene:At.49215UniProt:Q9FMG4
Coordinates (TAIR10) chr5:-:25681849..25683553
Molecular Weight (calculated) 35172.00 Da
IEP (calculated) 12.05
GRAVY (calculated) -1.58
Length 303 amino acids
Sequence (TAIR10)
(BLAST)
001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)