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AT5G64170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : dentin sialophosphoprotein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
dentin sialophosphoprotein-related; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54500.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK3VeggNOG:ENOG410YS2XEMBL:AB008266EMBL:AB008268EMBL:AK317207EMBL:BT030360EMBL:CP002688
EnsemblPlants:AT5G64170EnsemblPlants:AT5G64170.1EnsemblPlants:AT5G64170.2entrez:836538ExpressionAtlas:A8MQN2GeneID:836538GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0048511hmmpanther:PTHR33334hmmpanther:PTHR33334:SF5HOGENOM:HOG000015125InParanoid:A8MQN2
iPTMnet:Q9FMI3KEGG:ath:AT5G64170OMA:SYASNQVPaxDb:A8MQN2PaxDb:B9DGM4PaxDb:Q9FMI3PhylomeDB:A8MQN2
PRIDE:A8MQN2ProteinModelPortal:A8MQN2Proteomes:UP000006548RefSeq:NP_001078793.1RefSeq:NP_201222.1STRING:3702.AT5G64170.2TAIR:AT5G64170
UniGene:At.28965UniProt:Q9FMI3
Coordinates (TAIR10) chr5:-:25672904..25675445
Molecular Weight (calculated) 62487.20 Da
IEP (calculated) 4.39
GRAVY (calculated) -0.84
Length 566 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSGTNHLKS NTFIKREANM LGKNPWPEKD SGGSSVSRDT GTGKDVQDMT LEDTNTSDHG FNGGHVDVVE NFSTGDPMLC DTSAATNDGV YNYSLNSIPD
101: AENDLSFFDN GDKEKNDLFY GWGDIGNFED VDNMLRSCDS TFGLDSLNNE GDLGWFSSAQ PNEETAGAMT DDLKPDKMLE NQRTAMLQVE DFLNNSEPNH
201: AVEDEYGYTI EDDSAQGKSS QNVFDTSLQK KDILMLDVEA NLEKKQTDHL HHLDGKSDGF SENSFTLQHS GISREIMDTN QYYPPSAFQQ RDVPYSHFNC
301: EQPSVQVSAC ESKSGIKSEN KPSPSSASNE SYTSNHAQSI ESLQGPTVDD RFRKVFETRA NLLPGQDMPP SFAANTKKSS KTDSMVFPDA APIQKIGLEN
401: DHRKAATELE TSNMQGSSCV SSVVDDISLE ATSFRQLQQV IEQLDVRTKL CIRDSLYRLA KSAEQRHHGG NRPEKGAGSH LVTGEADKYA GFMDIETDTN
501: PIDRSIAHLL FHRPSDSSLS SDNNVLSYKS HPMIPQPNSS PSLRIEKQEE TTELRPEAEV VTSDNN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)