AT5G63930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT2G33170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:25583006..25586392 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 120484.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.93 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1102 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVKEMMKLAV FFISLLLILL ISETTGLNLE GQYLLEIKSK FVDAKQNLRN WNSNDSVPCG WTGVMCSNYS SDPEVLSLNL SSMVLSGKLS PSIGGLVHLK 0101: QLDLSYNGLS GKIPKEIGNC SSLEILKLNN NQFDGEIPVE IGKLVSLENL IIYNNRISGS LPVEIGNLLS LSQLVTYSNN ISGQLPRSIG NLKRLTSFRA 0201: GQNMISGSLP SEIGGCESLV MLGLAQNQLS GELPKEIGML KKLSQVILWE NEFSGFIPRE ISNCTSLETL ALYKNQLVGP IPKELGDLQS LEFLYLYRNG 0301: LNGTIPREIG NLSYAIEIDF SENALTGEIP LELGNIEGLE LLYLFENQLT GTIPVELSTL KNLSKLDLSI NALTGPIPLG FQYLRGLFML QLFQNSLSGT 0401: IPPKLGWYSD LWVLDMSDNH LSGRIPSYLC LHSNMIILNL GTNNLSGNIP TGITTCKTLV QLRLARNNLV GRFPSNLCKQ VNVTAIELGQ NRFRGSIPRE 0501: VGNCSALQRL QLADNGFTGE LPREIGMLSQ LGTLNISSNK LTGEVPSEIF NCKMLQRLDM CCNNFSGTLP SEVGSLYQLE LLKLSNNNLS GTIPVALGNL 0601: SRLTELQMGG NLFNGSIPRE LGSLTGLQIA LNLSYNKLTG EIPPELSNLV MLEFLLLNNN NLSGEIPSSF ANLSSLLGYN FSYNSLTGPI PLLRNISMSS 0701: FIGNEGLCGP PLNQCIQTQP FAPSQSTGKP GGMRSSKIIA ITAAVIGGVS LMLIALIVYL MRRPVRTVAS SAQDGQPSEM SLDIYFPPKE GFTFQDLVAA 0801: TDNFDESFVV GRGACGTVYK AVLPAGYTLA VKKLASNHEG GNNNNVDNSF RAEILTLGNI RHRNIVKLHG FCNHQGSNLL LYEYMPKGSL GEILHDPSCN 0901: LDWSKRFKIA LGAAQGLAYL HHDCKPRIFH RDIKSNNILL DDKFEAHVGD FGLAKVIDMP HSKSMSAIAG SYGYIAPEYA YTMKVTEKSD IYSYGVVLLE 1001: LLTGKAPVQP IDQGGDVVNW VRSYIRRDAL SSGVLDARLT LEDERIVSHM LTVLKIALLC TSVSPVARPS MRQVVLMLIE SERSEGEQEH LDTEELTQTT 1101: TP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)