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AT5G63890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:21841088 (2011): mitochondrion
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : histidinol dehydrogenase
Curator
Summary (TAIR10)
Encodes histidinol dehydrogenase. Up-regulated in response to UV-B.
Computational
Description (TAIR10)
histidinol dehydrogenase (HDH); FUNCTIONS IN: histidinol dehydrogenase activity; INVOLVED IN: response to UV, pollen development; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Histidinol dehydrogenase, conserved site (InterPro:IPR001692), Histidinol dehydrogenase, prokaryotic-type (InterPro:IPR012131); Has 9090 Blast hits to 9090 proteins in 2188 species: Archae - 179; Bacteria - 4137; Metazoa - 4; Fungi - 211; Plants - 72; Viruses - 0; Other Eukaryotes - 4487 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G63890EnsemblPlants:AT5G63890.1entrez:836509gramene_pathway:1.1.1.23gramene_pathway:HISTSYN-PWYgramene_plant_reactome:1119509gramene_plant_reactome:6875448
gramene_plant_reactome:6875743hmmpanther:PTHR21256hmmpanther:PTHR21256:SF2KEGG:00340+1.1.1.23Pfam:PF00815scanprosite:PS00611tair10-symbols:ATHDH
tair10-symbols:HDHtair10-symbols:HISN8TIGRfam:TIGR00069unipathway:UPA00031
Coordinates (TAIR10) chr5:-:25565600..25567879
Molecular Weight (calculated) 48959.60 Da
IEP (calculated) 5.10
GRAVY (calculated) -0.01
Length 452 amino acids
Sequence (TAIR10)
(BLAST)
001: MNEFVDQLRF TGYVCCSMKS YRLSELSSSQ VDSLKSRPRI DFSSIFATVN PIIDAVRSNG DNAVKEYTER FDKVQLNKVV EDMSELSVPE LDSNVKEAFD
101: VAYDNIYAFH LAQKSTEKSV ENMKGVRCKR VSRSIGSVGL YVPGGTAVLP STALMLAIPA QIAGCKTVVL ATPPSKDGSI CKEVLYCAKR AGVTHILKAG
201: GAQAIAAMAW GTDSCPKVEK IFGPGNQYVT AAKMILQNSE AMVSIDMPAG PSEVLVIADE HASPVYIAAD LLSQAEHGPD SQVVLVVVGD SVDLNAIEEE
301: IAKQCKSLPR GEFASKALSH SFTVFARDMI EAISFSNLYA PEHLIINVKD AEKWEGLIEN AGSVFIGPWT PESVGDYASG TNHVLPTYGY ARMYSGVSLD
401: SFLKFMTVQS LTEEGLRNLG PYVATMAEIE GLDAHKRAVT LRLKDIEAKQ LA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)