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AT5G63880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SNF7 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VPS20.1; INVOLVED IN: vesicle-mediated transport, N-terminal protein myristoylation; LOCATED IN: ESCRT III complex, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting-associated protein 20.2 (TAIR:AT5G09260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:21750EMBL:AB007646EMBL:AK118136EMBL:AY085225
EMBL:BT005575EMBL:CP002688EnsemblPlants:AT5G63880EnsemblPlants:AT5G63880.1
entrez:836508ExpressionAtlas:Q8GXN6GeneID:836508Genevisible:Q8GXN6
GO:GO:0005768GO:GO:0007034GO:GO:0015031hmmpanther:PTHR22761
HOGENOM:HOG000208642InParanoid:Q8GXN6IntAct:Q8GXN6InterPro:IPR005024
ncoils:CoilPfam:PF03357Pfam:Q8GXN6PhylomeDB:Q8GXN6
PRIDE:Q8GXN6PRO:PR:Q8GXN6ProteinModelPortal:Q8GXN6Proteomes:UP000006548
Reactome:R-ATH-1632852Reactome:R-ATH-917729RefSeq:NP_568980.1SMR:Q8GXN6
TAIR:AT5G63880tair10-symbols:VPS20.1UniGene:At.20645UniGene:At.66745
UniProt:Q8GXN6
Coordinates (TAIR10) chr5:+:25563890..25565258
Molecular Weight (calculated) 24795.50 Da
IEP (calculated) 4.44
GRAVY (calculated) -0.69
Length 219 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNLFVKKPQ ITEVDRAILS LKTQRRKLGQ YQQKLEKVIE AEKQAARDLI REKRKDRALL ALRKKRTQEE LLKQVDQWVI NVEQQLTDIE LTSKQKAVFE
101: SLKQGNSAIK AIQSELDLDD VQKLMDDTAD AKAYQDELNA ILGEKLSAED EEDILAEFDN LESQLIVDEM PEVPTKESEE SEKLDLPDVP TKTPVASNAE
201: ITPAESATKT KVLEEPLPA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)