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AT5G63860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Regulator of chromosome condensation (RCC1) family protein
Curator
Summary (TAIR10)
UV-B-specific signaling component that orchestrates expression of a range of genes with vital UV-protective functions. Located in the nucleus and the cytosol. Associates with chromatin via histones. UV-B light promotes URV8 protein accumulation in the nucleus.
Computational
Description (TAIR10)
UVB-RESISTANCE 8 (UVR8); FUNCTIONS IN: chromatin binding, guanyl-nucleotide exchange factor activity; INVOLVED IN: response to UV, response to UV-B; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G12350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21748DIP:DIP-59667NeggNOG:COG5184eggNOG:KOG1426
EMBL:AB007646EMBL:AF130441EMBL:AY125497EMBL:BT000600
EMBL:CP002688EnsemblPlants:AT5G63860EnsemblPlants:AT5G63860.1entrez:836506
Gene3D:2.130.10.30GeneID:836506Genevisible:Q9FN03GO:GO:0000785
GO:GO:0003682GO:GO:0005085GO:GO:0005634GO:GO:0005829
GO:GO:0009411GO:GO:0009649GO:GO:0009881GO:GO:0010224
GO:GO:0018298GO:GO:0042803GO:GO:0043547Gramene:AT5G63860.1
hmmpanther:PTHR22870hmmpanther:PTHR22870:SF193HOGENOM:HOG000240817InParanoid:Q9FN03
IntAct:Q9FN03InterPro:IPR000408InterPro:IPR009091InterPro:IPR032996
iPTMnet:Q9FN03KEGG:ath:AT5G63860MINT:MINT-7033609OMA:HGIRIKQ
PANTHER:PTHR22870:SF193PaxDb:Q9FN03PDB:4D9SPDB:4DNU
PDB:4DNVPDB:4DNWPDBsum:4D9SPDBsum:4DNU
PDBsum:4DNVPDBsum:4DNWPfam:PF00415Pfam:Q9FN03
Pfscan:PS50012PhylomeDB:Q9FN03PIR:T50662PRIDE:Q9FN03
PRINTS:PR00633PRO:PR:Q9FN03PROSITE:PS00626PROSITE:PS50012
ProteinModelPortal:Q9FN03Proteomes:UP000006548RefSeq:NP_201191.1scanprosite:PS00626
SMR:Q9FN03STRING:3702.AT5G63860.1SUPFAM:SSF50985TAIR:AT5G63860
tair10-symbols:UVR8UniGene:At.49214UniProt:Q9FN03
Coordinates (TAIR10) chr5:-:25554821..25558587
Molecular Weight (calculated) 47121.00 Da
IEP (calculated) 5.53
GRAVY (calculated) -0.35
Length 440 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEDMAADEV TAPPRKVLII SAGASHSVAL LSGDIVCSWG RGEDGQLGHG DAEDRPSPTQ LSALDGHQIV SVTCGADHTV AYSQSGMEVY SWGWGDFGRL
101: GHGNSSDLFT PLPIKALHGI RIKQIACGDS HCLAVTMEGE VQSWGRNQNG QLGLGDTEDS LVPQKIQAFE GIRIKMVAAG AEHTAAVTED GDLYGWGWGR
201: YGNLGLGDRT DRLVPERVTS TGGEKMSMVA CGWRHTISVS YSGALYTYGW SKYGQLGHGD LEDHLIPHKL EALSNSFISQ ISGGWRHTMA LTSDGKLYGW
301: GWNKFGQVGV GNNLDQCSPV QVRFPDDQKV VQVSCGWRHT LAVTERNNVF AWGRGTNGQL GIGESVDRNF PKIIEALSVD GASGQHIESS NIDPSSGKSW
401: VSPAERYAVV PDETGLTDGS SKGNGGDISV PQTDVKRVRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)