AT5G63840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (endoplasmic reticulum marker)
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycosyl hydrolases family 31 protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RADIAL SWELLING 3 (RSW3); FUNCTIONS IN: glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to cadmium ion, cellulose biosynthetic process, defense response to bacterium, unidimensional cell growth; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322); BEST Arabidopsis thaliana protein match is: heteroglycan glucosidase 1 (TAIR:AT3G23640.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:25545056..25548922 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 104280.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.20 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 921 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRSLLFVLSL ICFCSQTALS WKKEEFRSCD QTPFCKRARS RTPGACSLIV GDVSITDGDL VAKLLPKAPN QGDGDQIKPL ILSLSVYKDG IVRLKIDEDH 101: SLNPPKKRFQ VPDVVVSEFE EKKIWLQKVA TETISGDTSP SSVVYVSDGY EAVVRHDPFE VYVREKSGDR RRVVSLNSHG LFDFEQLGRK TEGDNWEEKF 201: RTHTDSRPSG PQSISFDVSF YDSSFVYGIP EHATSFALKP TKGPGVEESE PYRLFNLDVF EYDHESPFGL YGSIPFMVSH GKSGKTSGFF WLNAAEMQID 301: VLANGWDAES GISLPSSHSR IDTFWMSEAG IVDTFFFVGP EPKDVVKQYA SVTGTSAMPQ LFATGYHQCR WNYKDEEDVA QVDSKFDEHD IPYDVLWLDI 401: EHTDGKRYFT WDSVLFPHPE EMQKKLAAKG RKMVTIVDPH IKRDDSYFLH KEATQMGYYV KDSSGKDFDG WCWPGSSSYI DMLSPEIRKW WGGRFSYKNY 501: VGSTPSLYTW NDMNEPSVFN GPEVTMPRDA LHVGGVEHRE VHNAYGYYFH MATSDGLVMR EEGKDRPFVL SRAIFPGTQR YGAIWTGDNT AEWEHLRVSI 601: PMILTLGLTG ITFSGADIGG FFGNPEPELL VRWYQVGAYY PFFRGHAHHD TKRREPWLFG ERNTELMRDA IHTRYTLLPY FYTLFREANV TGVPVVRPLW 701: MEFPQDEATF SNDEAFMVGS GLLVQGVYTK GTTQASVYLP GKESWYDLRN GKTYVGGKTH KMDAPEESIP AFQKAGTIIP RKDRFRRSSS QMDNDPYTLV 801: VALNSSQEAE GELYIDDGKS FEFRRGSYIH RRFVFSKGVL TSTNLAPPEA RLSSQCLIDR IILLGHSSGP KSALVEPLNQ KAEIEMGPLR MGGLVASSGT 901: KVLTIRKPGV RVDQDWTVKI L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)