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AT5G63810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:14595688 (2003): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta-galactosidase 10
Curator
Summary (TAIR10)
member of Glycoside Hydrolase Family 35
Computational
Description (TAIR10)
beta-galactosidase 10 (BGAL10); FUNCTIONS IN: cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to karrikin; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 8 (TAIR:AT2G28470.1); Has 2086 Blast hits to 2065 proteins in 466 species: Archae - 15; Bacteria - 851; Metazoa - 358; Fungi - 207; Plants - 597; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G63810-MONOMERCAZy:GH35EC:3.2.1.23eggNOG:COG1874eggNOG:KOG0496EMBL:AB007646EMBL:AJ270306
EMBL:AY093118EMBL:BT010338EMBL:CP002688EnsemblPlants:AT5G63810EnsemblPlants:AT5G63810.1entrez:836501Gene3D:2.60.120.260
Gene3D:3.20.20.80GeneID:836501Genevisible:Q9FN08GO:GO:0004565GO:GO:0005618GO:GO:0005975GO:GO:0009505
GO:GO:0048046GO:GO:0080167Gramene:AT5G63810.1hmmpanther:PTHR23421hmmpanther:PTHR23421:SF67HOGENOM:HOG000239919InParanoid:Q9FN08
InterPro:IPR001944InterPro:IPR008979InterPro:IPR013781InterPro:IPR017853InterPro:IPR019801InterPro:IPR031330KEGG:00052+3.2.1.23
KEGG:00511+3.2.1.23KEGG:00531+3.2.1.23KEGG:00600+3.2.1.23KEGG:00604+3.2.1.23KEGG:ath:AT5G63810OMA:YAMWAASPANTHER:PTHR23421
PaxDb:Q9FN08Pfam:PF01301Pfam:Q9FN08PhylomeDB:Q9FN08PRIDE:Q9FN08PRINTS:PR00742PRO:PR:Q9FN08
PROSITE:PS01182ProteinModelPortal:Q9FN08Proteomes:UP000006548RefSeq:NP_201186.1scanprosite:PS01182SMR:Q9FN08STRING:3702.AT5G63810.1
SUPFAM:SSF49785SUPFAM:SSF51445TAIR:AT5G63810tair10-symbols:BGAL10TMHMM:TMhelixUniGene:At.705UniProt:Q9FN08
Coordinates (TAIR10) chr5:+:25537242..25541315
Molecular Weight (calculated) 83105.90 Da
IEP (calculated) 8.57
GRAVY (calculated) -0.36
Length 741 amino acids
Sequence (TAIR10)
(BLAST)
001: MNRVTTESIA STAILVVMVF LFSWRSIEAA NVSYDHRSLT IGNRRQLIIS AAIHYPRSVP AMWPSLVQTA KEGGCNAIES YVFWNGHEPS PGKYYFGGRY
101: NIVKFIKIVQ QAGMHMILRI GPFVAAEWNY GGVPVWLHYV PGTVFRADNE PWKHYMESFT TYIVNLLKQE KLFAPQGGPI ILSQVENEYG YYEKDYGEGG
201: KRYAQWSASM AVSQNIGVPW MMCQQWDAPP TVISTCNGFY CDQFTPNTPD KPKIWTENWP GWFKTFGGRD PHRPAEDVAY SVARFFGKGG SVHNYYMYHG
301: GTNFGRTSGG PFITTSYDYE APIDEYGLPR LPKWGHLKDL HKAIMLSENL LISGEHQNFT LGHSLEADVY TDSSGTCAAF LSNLDDKNDK AVMFRNTSYH
401: LPAWSVSILP DCKTEVFNTA KVTSKSSKVE MLPEDLKSSS GLKWEVFSEK PGIWGAADFV KNELVDHINT TKDTTDYLWY TTSITVSENE AFLKKGSSPV
501: LFIESKGHTL HVFINKEYLG TATGNGTHVP FKLKKPVALK AGENNIDLLS MTVGLANAGS FYEWVGAGLT SVSIKGFNKG TLNLTNSKWS YKLGVEGEHL
601: ELFKPGNSGA VKWTVTTKPP KKQPLTWYKV VIEPPSGSEP VGLDMISMGK GMAWLNGEEI GRYWPRIARK NSPNDECVKE CDYRGKFMPD KCLTGCGEPS
701: QRWYHVPRSW FKSSGNELVI FEEKGGNPMK IKLSKRKVSV V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)