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AT5G63800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28003327 (2017): extracellular region apoplast
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase family 35 protein
Curator
Summary (TAIR10)
Involved in mucilage formation. Mutants form columella and outer cell wall architecture of the mucilage cells resembles wild-type. However, mum2 seeds completely lack seed coat mucilage. This mutation appears to represent a later step in the development of this cell-type. Encodes a beta-galactosidase involved in seed coat mucilage biosynthesis. Member of Glycoside Hydrolase Family 35
Computational
Description (TAIR10)
MUCILAGE-MODIFIED 2 (MUM2); FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: plant-type cell wall modification, mucilage biosynthetic process involved in seed coat development; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 16 (TAIR:AT1G77410.1); Has 2471 Blast hits to 2080 proteins in 478 species: Archae - 15; Bacteria - 1165; Metazoa - 401; Fungi - 216; Plants - 595; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G63800-MONOMERCAZy:GH35EC:3.2.1.23eggNOG:COG1874eggNOG:KOG0496EMBL:AB005234EMBL:AJ270302
EMBL:AK229786EMBL:CP002688EnsemblPlants:AT5G63800EnsemblPlants:AT5G63800.1entrez:836500Gene3D:2.60.120.260Gene3D:3.20.20.80
GeneID:836500Genevisible:Q9FFN4GO:GO:0004565GO:GO:0005618GO:GO:0005975GO:GO:0009827GO:GO:0048046
GO:GO:0048354Gramene:AT5G63800.1hmmpanther:PTHR23421hmmpanther:PTHR23421:SF73HOGENOM:HOG000239919InParanoid:Q9FFN4InterPro:IPR001944
InterPro:IPR008979InterPro:IPR013781InterPro:IPR017853InterPro:IPR019801InterPro:IPR031330KEGG:00052+3.2.1.23KEGG:00511+3.2.1.23
KEGG:00531+3.2.1.23KEGG:00600+3.2.1.23KEGG:00604+3.2.1.23KEGG:ath:AT5G63800OMA:LVNFDQHPANTHER:PTHR23421PaxDb:Q9FFN4
Pfam:PF01301Pfam:Q9FFN4PhylomeDB:Q9FFN4PRIDE:Q9FFN4PRINTS:PR00742PRO:PR:Q9FFN4PROSITE:PS01182
ProteinModelPortal:Q9FFN4Proteomes:UP000006548RefSeq:NP_568978.2scanprosite:PS01182SMR:Q9FFN4STRING:3702.AT5G63800.1SUPFAM:SSF49785
SUPFAM:SSF51445TAIR:AT5G63800tair10-symbols:BGAL6tair10-symbols:MUM2TMHMM:TMhelixUniGene:At.21611UniProt:Q9FFN4
Coordinates (TAIR10) chr5:+:25530323..25535678
Molecular Weight (calculated) 79763.50 Da
IEP (calculated) 9.11
GRAVY (calculated) -0.25
Length 718 amino acids
Sequence (TAIR10)
(BLAST)
001: MEMGRLVFGL CLILIVGTFL EFSGGATAAK GVTYDGRSLI IDGQRKLLFS GSIHYPRSTP EMWPSLIKKT KEGGIDVIQT YVFWNLHEPK LGQYDFSGRN
101: DLVKFIKEIR SQGLYVCLRI GPFIEAEWNY GGLPFWLRDV PGMVYRTDNE PFKFHMQKFT AKIVDLMKSE GLYASQGGPI ILSQIENEYA NVEGAFHEKG
201: ASYIKWAGQM AVGLKTGVPW IMCKSPDAPD PVINTCNGMK CGETFPGPNS PNKPKMWTED WTSFFQVYGK EPYIRSAEDI AFHAALFVAK NGSYINYYMY
301: HGGTNFGRTS SSYFITGYYD QAPLDEYGLL RQPKYGHLKE LHAAIKSSAN PLLQGKQTIL SLGPMQQAYV FEDANNGCVA FLVNNDAKAS QIQFRNNAYS
401: LSPKSIGILQ NCKNLIYETA KVNVKMNTRV TTPVQVFNVP DNWNLFRETI PAFPGTSLKT NALLEHTNLT KDKTDYLWYT SSFKLDSPCT NPSIYTESSG
501: HVVHVFVNNA LAGSGHGSRD IRVVKLQAPV SLINGQNNIS ILSGMVGLPD SGAYMERRSY GLTKVQISCG GTKPIDLSRS QWGYSVGLLG EKVRLYQWKN
601: LNRVKWSMNK AGLIKNRPLA WYKTTFDGPN GDGPVGLHMS SMGKGEIWVN GESIGRYWVS FLTPAGQPSQ SIYHIPRAFL KPSGNLLVVF EEEGGDPLGI
701: SLNTISVVGS SQAQSQFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)