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AT5G63790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAC domain containing protein 102
Curator
Summary (TAIR10)
Encodes a member of the NAC family of transcription factors. ANAC102 appears to have a role in mediating response to low oxygen stress (hypoxia) in germinating seedlings.
Computational
Description (TAIR10)
NAC domain containing protein 102 (NAC102); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT5G08790.1); Has 3012 Blast hits to 3006 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3012; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:21741eggNOG:ENOG410JSQKeggNOG:ENOG41108KEEMBL:AB005234EMBL:AY045843EMBL:AY088431EMBL:BT000896
EMBL:CP002688EnsemblPlants:AT5G63790EnsemblPlants:AT5G63790.1entrez:836499GeneID:836499Genevisible:Q8H115GO:GO:0001666
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009507GO:GO:0044212Gramene:AT5G63790.1hmmpanther:PTHR31719
hmmpanther:PTHR31719:SF17HOGENOM:HOG000237406InParanoid:Q8H115IntAct:Q8H115InterPro:IPR003441KEGG:ath:AT5G63790OMA:CRRCASE
PaxDb:Q8H115Pfam:PF02365Pfam:Q8H115Pfscan:PS51005PhylomeDB:Q8H115PRIDE:Q8H115PRO:PR:Q8H115
PROSITE:PS51005ProteinModelPortal:Q8H115Proteomes:UP000006548RefSeq:NP_201184.2SMR:Q8H115STRING:3702.AT5G63790.1SUPFAM:SSF101941
TAIR:AT5G63790tair10-symbols:ANAC102tair10-symbols:NAC102UniGene:At.49213UniGene:At.75365UniGene:At.8706UniProt:Q8H115
Coordinates (TAIR10) chr5:-:25526887..25528013
Molecular Weight (calculated) 36000.70 Da
IEP (calculated) 8.65
GRAVY (calculated) -0.63
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFALFSSIS IFEINHKDPP IRRFIKTQNR ILSTRKQQGT FPKMKAELNL PAGFRFHPTD EELVKFYLCR RCASEPINVP VIAEIDLYKF NPWELPEMAL
101: YGEKEWYFFS HRDRKYPNGS RPNRAAGTGY WKATGADKPI GKPKTLGIKK ALVFYAGKAP KGIKTNWIMH EYRLANVDRS ASTNKKNNLR LDDWVLCRIY
201: NKKGTMEKYL PAAAEKPTEK MSTSDSRCSS HVISPDVTCS DNWEVESEPK WINLEDALEA FNDDTSMFSS IGLLQNDAFV PQFQYQSSDF VDSFQDPFEQ
301: KPFLNWNFAP QG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)