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AT5G63750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARIADNE 13 (ARI13); FUNCTIONS IN: zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT5G63730.1); Has 1670 Blast hits to 1662 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 716; Fungi - 141; Plants - 537; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG410XP9YeggNOG:KOG1815EMBL:AB005234
EMBL:AJ510216EMBL:BX833901EMBL:CP002688EnsemblPlants:AT5G63750
EnsemblPlants:AT5G63750.1entrez:836495Gene3D:3.30.40.10GeneID:836495
Genevisible:Q9FFN9GO:GO:0000151GO:GO:0000209GO:GO:0005737
GO:GO:0008270GO:GO:0016874GO:GO:0031624GO:GO:0032436
GO:GO:0042787GO:GO:0061630Gramene:AT5G63750.1hmmpanther:PTHR11685
hmmpanther:PTHR11685:SF135HOGENOM:HOG000034049InParanoid:Q9FFN9InterPro:IPR001841
InterPro:IPR001876InterPro:IPR002867InterPro:IPR013083InterPro:IPR031127
KEGG:ath:AT5G63750KO:K11968OMA:YEMSKREPANTHER:PTHR11685
PaxDb:Q9FFN9Pfam:PF01485Pfam:PF13923Pfam:Q9FFN9
Pfscan:PS50089PhylomeDB:Q9FFN9PRIDE:Q9FFN9PRO:PR:Q9FFN9
PROSITE:PS00518PROSITE:PS01358PROSITE:PS50089ProteinModelPortal:Q9FFN9
Proteomes:UP000006548RefSeq:NP_201180.1scanprosite:PS01358SMART:SM00647
SMR:Q9FFN9STRING:3702.AT5G63750.1SUPFAM:SSF57850TAIR:AT5G63750
tair10-symbols:ARI13tair10-symbols:ATARI13UniGene:At.50552UniPathway:UPA00143
UniProt:Q9FFN9
Coordinates (TAIR10) chr5:-:25513038..25514729
Molecular Weight (calculated) 61607.30 Da
IEP (calculated) 6.07
GRAVY (calculated) -0.40
Length 536 amino acids
Sequence (TAIR10)
(BLAST)
001: MENNREGPYS VLTRDQLKGN MKKQIAEISE IFSLSKPDAT VLLMFLRWDS HEVSEFLVEN NEKVLSESGL KPVVVDPNQD LYKISSCGIC FKTCDDGDYL
101: ISTPFCSHMF CKSCWRKYLE KNFYLVEKTQ TRISCPHGAC QAAVGPDTIQ KLTVCDQEMY VEYILRSYIE GNKVLEIKYC PAQDCNYVIE FHQKNHDGAD
201: QEDYGFNVVC LCGHIFCWRC MLESHKPVTC NNASDWLFRD LNSLSKESGE KPLSLSSFET REKTYPLSSI KATKKVCPHC LRPADLGTKQ YLRFLTCACN
301: GRFCWKCMQP EEAHKTESGF YKFCNVSMTF EGRAPKTLEG RAEPENSCVG LWKASEVSLK QAKSDLQAFE ESNIKNPSDL TEKDFTIIRK GLMLIVQCRQ
401: VLKWSCVYDY LHAEYEMSKR EYLRFLQADA TSLVESFSKT LNEEIGRASS ATYENFCCVK HKVTIETSNI GNYFYHFIKT LQEGLDDVKV KSYDDYGGLF
501: WLCDRCTYGN TWFHKECLMC SDDIAARVDL SDMSLN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)