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AT5G63700.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc ion binding;DNA binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc ion binding;DNA binding; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Plus-3 domain, subgroup (InterPro:IPR018144), SWIB/MDM2 domain (InterPro:IPR003121), Zinc finger, PHD-type (InterPro:IPR001965), Plus-3 (InterPro:IPR004343), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain;Plus-3;GYF (TAIR:AT5G08430.1); Has 1143 Blast hits to 955 proteins in 114 species: Archae - 0; Bacteria - 2; Metazoa - 778; Fungi - 27; Plants - 204; Viruses - 3; Other Eukaryotes - 129 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5531eggNOG:KOG1081eggNOG:KOG1946EMBL:CP002688EnsemblPlants:AT5G63700EnsemblPlants:AT5G63700.1entrez:836490
Gene3D:1.10.245.10Gene3D:3.30.40.10GeneID:836490GO:GO:0003677GO:GO:0005634GO:GO:0006352GO:GO:0008270
GO:GO:0016570Gramene:AT5G63700.1hmmpanther:PTHR14445hmmpanther:PTHR14445:SF39InParanoid:F4KAT5InterPro:IPR001965InterPro:IPR003121
InterPro:IPR004343InterPro:IPR011011InterPro:IPR013083InterPro:IPR017907iPTMnet:F4KAT5KEGG:ath:AT5G63700OMA:EKECEDW
PaxDb:F4KAT5Pfam:PF02201Pfam:PF03126Pfscan:PS51360PRIDE:F4KAT5PROSITE:PS00518PROSITE:PS51360
ProteinModelPortal:F4KAT5Proteomes:UP000006548RefSeq:NP_201175.2scanprosite:PS00518SMART:SM00249SMART:SM00719SMR:F4KAT5
STRING:3702.AT5G63700.1SUPFAM:0053761SUPFAM:SSF159042SUPFAM:SSF47592SUPFAM:SSF57903TAIR:AT5G63700UniGene:At.28985
UniProt:F4KAT5
Coordinates (TAIR10) chr5:-:25493934..25497632
Molecular Weight (calculated) 69488.20 Da
IEP (calculated) 6.62
GRAVY (calculated) -0.68
Length 602 amino acids
Sequence (TAIR10)
(BLAST)
001: MARDMNVVEI LDDEEEDEKE CEDWCFICKD GGNLMLCDFK DCPKVYHESC VEKDSSASKN GDSYICMWHS CYLCKKTPKL CCLCCSHAVC EGCVTHAEFI
101: QLKGDKGLCN QCQEYVFALE EIQEYDAAGD KLDLTDRNTF ECLFLEYWEI AKKQEGLTFD DVRKVCASKP QKKGVKSKYK DDPKFSLGDV HTSKSQKKGD
201: KLKNKDDPKF ALGDAHTSKS GKKGVKLKNK DDPKFLVSDH AVEDAVDYKK VGKNKRMEFI RWGSKPLIDF LTSIGEDTRE AMSQHSVESV IRRYIREKNL
301: LDREKKKKVH CDEKLYSIFR KKSINQKRIY TLLNTHLKEN LDQVEYFTPL ELGFIEKNEK RFSEKNDKVM MPCKKQKTES SDDEICEKEV QPEMRATGFA
401: TINADNLKLV YLRKSLVLEL LKQNDSFVDK VVGSFVKVKN GPRDFMAYQI LQVTGIKNAD DQSEGVLLHV SGMASGVSIS KLDDSDIREE EIKDLKQKVM
501: NGLLRQTTVV EMEQKAKALH YDITKHWIAR QLNILQKRIN CANEKGWRRE LEEYLEQREL LEKPSEQERL LKEIPRIIED FIEIKQEPCV GGLSHEAVIN
601: ID
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)