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AT5G63640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ENTH/VHS/GAT family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ENTH/VHS/GAT family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT4G32760.1); Has 1276 Blast hits to 1268 proteins in 185 species: Archae - 0; Bacteria - 4; Metazoa - 656; Fungi - 270; Plants - 272; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y26GeggNOG:KOG1087EMBL:AB005234EMBL:AY062583
EMBL:AY114647EMBL:CP002688EnsemblPlants:AT5G63640EnsemblPlants:AT5G63640.1
entrez:836484Gene3D:1.20.58.160Gene3D:1.25.40.90GeneID:836484
GO:GO:0005622GO:GO:0005886GO:GO:0006886Gramene:AT5G63640.1
hmmpanther:PTHR13856hmmpanther:PTHR13856:SF81HOGENOM:HOG000237674InterPro:IPR002014
InterPro:IPR004152InterPro:IPR008942KEGG:ath:AT5G63640ncoils:Coil
OMA:MNNIGENPfam:PF00790Pfam:PF03127Pfscan:PS50179
Pfscan:PS50909PhylomeDB:Q9FFQ0PROSITE:PS50179PROSITE:PS50909
Proteomes:UP000006548Reactome:R-ATH-432720RefSeq:NP_201169.1SMART:SM00288
SMR:Q9FFQ0STRING:3702.AT5G63640.1SUPFAM:SSF48464SUPFAM:SSF89009
TAIR:AT5G63640UniGene:At.8695UniProt:Q9FFQ0
Coordinates (TAIR10) chr5:+:25478935..25481221
Molecular Weight (calculated) 49425.30 Da
IEP (calculated) 6.69
GRAVY (calculated) -0.68
Length 447 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAELVSSAT SEKLADVDWA KNIEICELAA RDERQAKDVI KAIKKRLGSK NPNTQLYAVQ LLEMLMNNIG ENIHKQVIDT GVLPTLVKIV KKKSDLPVRE
101: RIFLLLDATQ TSLGGASGKF PQYYTAYYEL VNAGVKFTQR PNATPVVVTA QAVPRNTLNE QLASARNEGP ATTQQRESQS VSPSSILQKA STALEILKEV
201: LDAVDSQNPE GAKDEFTLDL VEQCSFQKER VMHLVMTSRD EKAVSKAIEL NEQLQRILNR HEDLLSGRIT VPSRSTTSNG YHSNLEPVRP ISNGDQKREL
301: KASNANTESS SFISNRAHLK LEEEDEEEEP EQLFRRLRKG KARARPEDEE EPSPPQGLPG SAIHNERLNR PLIRPLPSEE ASRGGDSHSQ SPPVVIPPPP
401: AKHVEREKFF KENKGDGALG LPGHMRGLSL HSRDGSSSRS GSVDFSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)