suba logo
AT5G63570.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : glutamate-1-semialdehyde-2,1-aminomutase
Curator
Summary (TAIR10)
Encodes a protein with homology to glutamate-1-semialdehyde 2,1-aminomutase catalyzing the conversion of glutamate-1-semialdehyde (GSA) into 5-amino levulinate. The expression of this gene was demonstrated to be light-induced.
Computational
Description (TAIR10)
glutamate-1-semialdehyde-2,1-aminomutase (GSA1); FUNCTIONS IN: glutamate-1-semialdehyde 2,1-aminomutase activity; INVOLVED IN: response to light stimulus, porphyrin biosynthetic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase (InterPro:IPR004639), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate-1-semialdehyde 2,1-aminomutase 2 (TAIR:AT3G48730.1); Has 34880 Blast hits to 34874 proteins in 2819 species: Archae - 734; Bacteria - 23560; Metazoa - 547; Fungi - 812; Plants - 385; Viruses - 2; Other Eukaryotes - 8840 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G63570-MONOMERBioCyc:MetaCyc:AT5G63570-MONOMERBioGrid:21718EC:5.4.3.8eggNOG:COG0001eggNOG:ENOG410IPFVEMBL:AB005234
EMBL:AY102109EMBL:AY139804EMBL:CP002688EMBL:U03773EnsemblPlants:AT5G63570EnsemblPlants:AT5G63570.1entrez:836476
Gene3D:3.40.640.10Gene3D:3.90.1150.10GeneID:836476Genevisible:P42799GO:GO:0006782GO:GO:0008483GO:GO:0009507
GO:GO:0009570GO:GO:0009941GO:GO:0015995GO:GO:0030170GO:GO:0042286GO:GO:0042802GO:GO:0048046
Gramene:AT5G63570.1gramene_pathway:5.4.3.8gramene_pathway:PWY-5188gramene_plant_reactome:4827054gramene_plant_reactome:6877139HAMAP:MF_00375hmmpanther:PTHR11986
hmmpanther:PTHR11986:SF84HOGENOM:HOG000020210InParanoid:P42799IntAct:P42799InterPro:IPR004639InterPro:IPR005814InterPro:IPR015421
InterPro:IPR015422InterPro:IPR015424KEGG:00860+5.4.3.8KEGG:ath:AT5G63570KO:K01845OMA:EFAELICPANTHER:PTHR11986
PaxDb:P42799Pfam:P42799Pfam:PF00202PhylomeDB:P42799PRIDE:P42799PRO:PR:P42799PROSITE:PS00600
ProteinModelPortal:P42799Proteomes:UP000006548RefSeq:NP_201162.1scanprosite:PS00600SMR:P42799STRING:3702.AT5G63570.1SUPFAM:SSF53383
TAIR:AT5G63570tair10-symbols:GSA1TIGRfam:TIGR00713TIGRFAMs:TIGR00713UniGene:At.27758UniPathway:UPA00251UniPathway:UPA00668
UniProt:P42799
Coordinates (TAIR10) chr5:+:25451957..25453620
Molecular Weight (calculated) 50372.70 Da
IEP (calculated) 6.86
GRAVY (calculated) 0.01
Length 474 amino acids
Sequence (TAIR10)
(BLAST)
001: MSATLTGSGT ALGFSCSSKI SKRVSSSPAS NRCCIKMSVS VDEKKKSFSL QKSEEAFNAA KNLMPGGVNS PVRAFKSVGG QPVLIDSVKG SKMWDIDGNE
101: YIDYVGSWGP AIIGHADDEV LAALAETMKK GTSFGAPCLL ENVLAEMVIS AVPSIEMVRF VNSGTEACMG VLRLARAFTN KEKFIKFEGC YHGHANAFLV
201: KAGSGVATLG LPDSPGVPKA ATSDTLTAPY NDLEAVEKLF AAHKGEISAV ILEPVVGNSG FIPPTPEFIN GLRQLTKDNG VLLIFDEVMT GFRLAYGGAQ
301: EYFGITPDLT TLGKIIGGGL PVGAYGGRRD IMEMVAPAGP MYQAGTLSGN PLAMTAGIHT LKRLKQAGTY EYLDKITKEL TNGILEAGKK TGHPMCGGYI
401: SGMFGFFFAE GPVYNFADSK KSDTEKFGRF FRGMLEEGVY FAPSQFEAGF TSLAHTPEDI QLTIAAAERV LSRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)