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AT5G63520.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
cytosol 0.910
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
BioGrid:21713eggNOG:ENOG410IHZKeggNOG:ENOG411142EEMBL:AB007649EMBL:AK118351EMBL:CP002688EnsemblPlants:AT5G63520
EnsemblPlants:AT5G63520.1entrez:836471GeneID:836471Genevisible:Q9FMV0Gramene:AT5G63520.1hmmpanther:PTHR14939hmmpanther:PTHR14939:SF5
HOGENOM:HOG000090971InParanoid:Q9FMV0InterPro:IPR001810InterPro:IPR019494KEGG:ath:AT5G63520ncoils:CoilPaxDb:Q9FMV0
Pfam:PF00646Pfam:Q9FMV0PhylomeDB:Q9FMV0PRO:PR:Q9FMV0ProteinModelPortal:Q9FMV0Proteomes:UP000006548RefSeq:NP_201157.3
SMART:SM01204SUPFAM:SSF81383TAIR:AT5G63520UniGene:At.46068UniProt:Q9FMV0
Coordinates (TAIR10) chr5:-:25426300..25429093
Molecular Weight (calculated) 57189.70 Da
IEP (calculated) 5.03
GRAVY (calculated) -0.12
Length 519 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTKGKSENS KKMKTDMADM VPIAAMNEDL LHNILLRLPA KSFAFASCVN RFWSSVCNRI LSRPKMISAF SRNPDQLRAG EEVLDKVLSE PIRPQFVIAN
101: ITCGNMEETL TLITERVGSR VPIIVSVVTG ILGKEACNDK AGEVRLHSTS DDELFDVANF AILLTIGYLP GMKVDIIPVI QAKGESGAEM EDKFVMDIRN
201: YMSMVSGHAA APACLILFAE DTHATEPVLH KLDYAMPAET VIVGGQIGEF LHKRGNEPRN VQLQKDDIRV LAGLIFARDR HRPAQAERIQ FDTAISNGMS
301: SVDLRYKAAN VNVSLGPSCP STLLTAKRRG EAEVLDGDQI LDDIDNILEN YIWENDSYLG VIKRRKYSIG LEEKPKIMSS LVFHQVNGSD DQDLLVDGAG
401: IKTGDQFQVY LPDLKVAEAA LNDVSAQLRN LKSKPNKPEV VGGFAFVGSC RGDSFFGCPN ADSSPFLENF PELPFGGIFC DGEIGRSLIL EEGEEKKEVS
501: IQRFLHVYSS VYLIVSYTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)