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AT5G63510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : gamma carbonic anhydrase like 1
Curator
Summary (TAIR10)
Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex.
Computational
Description (TAIR10)
gamma carbonic anhydrase like 1 (GAMMA CAL1); FUNCTIONS IN: carbonate dehydratase activity; INVOLVED IN: response to salt stress, photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase-like 2 (TAIR:AT3G48680.1); Has 6342 Blast hits to 6315 proteins in 1761 species: Archae - 154; Bacteria - 4172; Metazoa - 13; Fungi - 12; Plants - 165; Viruses - 0; Other Eukaryotes - 1826 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G63510-MONOMERBioCyc:ARA:GQT-2317-MONOMERBioCyc:MetaCyc:AT5G63510-MONOMERBioGrid:21712EMBL:AB007649EMBL:AY054587EMBL:AY064687
EMBL:AY087124EMBL:CP002688EnsemblPlants:AT5G63510EnsemblPlants:AT5G63510.1entrez:836470ExpressionAtlas:Q9FMV1GeneID:836470
Genevisible:Q9FMV1GO:GO:0031966GO:GO:0046872hmmpanther:PTHR13061hmmpanther:PTHR13061:SF0HOGENOM:HOG000049430InParanoid:Q9FMV1
IntAct:Q9FMV1InterPro:IPR011004iPTMnet:Q9FMV1Pfam:Q9FMV1PhylomeDB:Q9FMV1PRIDE:Q9FMV1PRO:PR:Q9FMV1
ProteinModelPortal:Q9FMV1Proteomes:UP000006548RefSeq:NP_201156.1SMR:Q9FMV1SUPFAM:SSF51161TAIR:AT5G63510tair10-symbols:GAMMA CAL1
UniGene:At.7350UniProt:Q9FMV1
Coordinates (TAIR10) chr5:+:25424054..25425612
Molecular Weight (calculated) 27571.30 Da
IEP (calculated) 8.96
GRAVY (calculated) 0.06
Length 252 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSIARLSR RGVTSNLIRR CFAAEAALAR KTELPKPQFT VSPSTDRVKW DYRGQRQIIP LGQWLPKVAV DAYVAPNVVL AGQVTVWDGS SVWNGAVLRG
101: DLNKITVGFC SNVQERCVVH AAWSSPTGLP AATIIDRYVT VGAYSLLRSC TIEPECIIGQ HSILMEGSLV ETRSILEAGS VVPPGRRIPS GELWGGNPAR
201: FIRTLTNEET LEIPKLAVAI NHLSGDYFSE FLPYSTVYLE VEKFKKSLGI AV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)