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AT5G63490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (TAIR:AT5G50530.1); Has 8040 Blast hits to 6478 proteins in 1504 species: Archae - 1004; Bacteria - 5599; Metazoa - 7; Fungi - 119; Plants - 199; Viruses - 0; Other Eukaryotes - 1112 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0517eggNOG:ENOG410IF96EMBL:AB007649EMBL:AK228838EMBL:AK229928EMBL:CP002688EnsemblPlants:AT5G63490
EnsemblPlants:AT5G63490.1entrez:836468GeneID:836468Genevisible:Q9FMV3GO:GO:0016021Gramene:AT5G63490.1hmmpanther:PTHR13780
hmmpanther:PTHR13780:SF45HOGENOM:HOG000238622InParanoid:Q9FMV3InterPro:IPR000270InterPro:IPR000644iPTMnet:Q9FMV3KEGG:ath:AT5G63490
OMA:ERMFRPAPaxDb:Q9FMV3Pfam:PF00564Pfam:PF00571Pfam:Q9FMV3Pfscan:PS51371Pfscan:PS51745
PhylomeDB:Q9FMV3PRIDE:Q9FMV3PRO:PR:Q9FMV3PROSITE:PS51371PROSITE:PS51745ProteinModelPortal:Q9FMV3Proteomes:UP000006548
RefSeq:NP_201154.1SMART:SM00116SMART:SM00666SMR:Q9FMV3STRING:3702.AT5G63490.1SUPFAM:SSF54277SUPFAM:SSF54631
TAIR:AT5G63490TMHMM:TMhelixUniGene:At.49212UniGene:At.71117UniProt:Q9FMV3
Coordinates (TAIR10) chr5:-:25418716..25421970
Molecular Weight (calculated) 59438.30 Da
IEP (calculated) 6.46
GRAVY (calculated) -0.20
Length 543 amino acids
Sequence (TAIR10)
(BLAST)
001: MASQGGPRRS LSVTTASLHG KKKSMDMAER GLDTGRRSLT VSRSPLGLTG GERTVKRLRL SKALTVPATT TIYEACKRMA SRRVDALLLT DSNEMLCGIL
101: TDKDIATRVI SQELNVEETP VSKVMTKNPM FVLSETLAVE ALQKMVQGKF RHLPVVENGE VIALLDIAKC LYDAIARMER AAEKGKAIAA AVEGVEKSWG
201: TNTSVPNTFI ETLRDRMFRP SLSTIIPDDT KVLKVSPTDT VLTVAKKMVE FQSSCAVVII EDKLRGIFTS KDILMRVVAE NLPPSETLVE TVMTQNPEST
301: IVDTPIVEAL HIMHEGKFLH LPVTDKEGDV VAVVDVIHVT HAAVATAGTT AGIGNEATNT MMQKFWDSAM ALSPNEDDED SRSESSMKVA SEAETGKSFP
401: FANTFSFKIE DKKHRKHRFI SDTRSLTEVI TAIIQRVGDD IDPDNFPQIL YEDEDHDKVL LASDSDLQAA IEHAKSIGWK SLRLHLDDSR EGKGRRRRRA
501: SGSAESMEYV ETDAWAAAYS GVAAGAALVA GLGFMAFLRK FGH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)