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AT5G63420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22616989 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-metabolising metallo-beta-lactamase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 2746 (emb2746); FUNCTIONS IN: hydrolase activity, DNA binding, catalytic activity; INVOLVED IN: metabolic process, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), RNA-metabolising metallo-beta-lactamase (InterPro:IPR011108), Beta-lactamase-like (InterPro:IPR001279), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G38250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0595eggNOG:KOG1137eggNOG:KOG4282EMBL:AK221272EMBL:BT004210EMBL:CP002688EnsemblPlants:AT5G63420
EnsemblPlants:AT5G63420.1entrez:836461Gene3D:1.10.10.60Gene3D:3.60.15.10GeneID:836461GO:GO:0003677GO:GO:0003723
GO:GO:0009507GO:GO:0009658GO:GO:0009793GO:GO:0009942GO:GO:0046872GO:GO:0060918Gramene:AT5G63420.1
hmmpanther:PTHR11203hmmpanther:PTHR11203:SF22IntAct:Q84W56InterPro:IPR001279InterPro:IPR004613InterPro:IPR009057InterPro:IPR011108
InterPro:IPR017877KEGG:ath:AT5G63420MINT:MINT-8360651OMA:FEDMNNIPANTHER:PTHR11203:SF22Pfam:PF00753Pfam:PF07521
Pfam:PF12706Pfam:PF13837Pfscan:PS50090PhylomeDB:Q84W56PROSITE:PS50090Proteomes:UP000006548RefSeq:NP_201147.2
SMART:SM00849SMR:Q84W56STRING:3702.AT5G63420.1SUPFAM:SSF56281TAIR:AT5G63420tair10-symbols:emb2746UniGene:At.28999
UniProt:Q84W56
Coordinates (TAIR10) chr5:+:25400515..25405807
Molecular Weight (calculated) 100559.00 Da
IEP (calculated) 8.39
GRAVY (calculated) -0.39
Length 911 amino acids
Sequence (TAIR10)
(BLAST)
001: MMKPASLQGF SSHASSSIYS DVRRPATTPS KMAAFSALSL CPYTFTFRQS SRIKSTVSCS VTSAPASGTS SSSKTPRRRS GRLEGVGKSM EDSVKRKMEQ
101: FYEGTDGPPL RILPIGGLGE IGMNCMLVGN YDRYILIDAG IMFPDYDEPG IQKIMPDTGF IRRWKHKIEA VVITHGHEDH IGALPWVIPA LDPNTPIFAS
201: SFTMELIKKR LKEHGIFVQS RLKTFSTRRR FMAGPFEIEP ITVTHSIPDC SGLFLRCADG NILHTGDWKI DEAPLDGKVF DREALEELSK EGVTLMMSDS
301: TNVLSPGRTI SEKVVADALV RNVMAAKGRV ITTQFASNIH RLGSIKAAAD ITGRKLVFVG MSLRTYLEAA WRDGKAPIDP SSLIKVEDIE AYAPKDLLIV
401: TTGSQAEPRA ALNLASYGSS HAFKLTKEDI ILYSAKVIPG NESRVMKMMN RIADIGPNII MGKNEMLHTS GHAYRGELEE VLKIVKPQHF LPIHGELLFL
501: KEHELLGKST GIRHTTVIKN GEMLGVSHLR NRRVLSNGFS SLGRENLQLM YSDGDKAFGT SSELCIDERL RISSDGIIVL SMEIMRPGVS ENTLKGKIRI
601: TTRCMWLDKG RLLDALHKAA HAALSSCPVT CPLSHMERTV SEVLRKIVRK YSGKRPEVIA IATENPMAVR ADEVSARLSG DPSVGSGVAA LRKVVEGNDK
701: RSRAKKAPSQ EASPKEVDRT LEDDIIDSAR LLAEEETAAS TYTEEVDTPV GSSSEESDDF WKSFINPSSS PSPSETENMN KVADTEPKAE GKENSRDDDE
801: LADASDSETK SSPKRVRKNK WKPEEIKKVI RMRGELHSRF QVVKGRMALW EEISSNLSAE GINRSPGQCK SLWASLIQKY EESKADERSK TSWPHFEDMN
901: NILSELGTPA S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)