suba logo
AT5G63380.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AMP-dependent synthetase and ligase family protein
Curator
Summary (TAIR10)
Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.
Computational
Description (TAIR10)
AMP-dependent synthetase and ligase family protein; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: OPC-8:0 CoA ligase1 (TAIR:AT1G20510.1); Has 81844 Blast hits to 74712 proteins in 3773 species: Archae - 1219; Bacteria - 53606; Metazoa - 3425; Fungi - 4605; Plants - 2698; Viruses - 1; Other Eukaryotes - 16290 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G63380-MONOMEREC:6.2.1.-eggNOG:COG0318eggNOG:KOG1176
EMBL:AB007649EMBL:AB023035EMBL:AY136459EMBL:AY250835
EMBL:AY376731EMBL:BT010394EMBL:CP002688EnsemblPlants:AT5G63380
EnsemblPlants:AT5G63380.1entrez:836457GeneID:836457Genevisible:Q84P23
GO:GO:0004321GO:GO:0005524GO:GO:0005777GO:GO:0009695
GO:GO:0016874GO:GO:0031408Gramene:AT5G63380.1gramene_plant_reactome:1119531
gramene_plant_reactome:6876097hmmpanther:PTHR24096hmmpanther:PTHR24096:SF251HOGENOM:HOG000230009
InParanoid:Q84P23InterPro:IPR000873InterPro:IPR020845InterPro:IPR025110
iPTMnet:Q84P23KEGG:ath:AT5G63380OMA:LAHCARNPaxDb:Q84P23
Pfam:PF00501Pfam:PF13193Pfam:Q84P23PhylomeDB:Q84P23
PRIDE:Q84P23PRO:PR:Q84P23PROSITE:PS00455ProteinModelPortal:Q84P23
Proteomes:UP000006548Reactome:R-ATH-75105RefSeq:NP_201143.1SABIO-RK:Q84P23
scanprosite:PS00455SMR:Q84P23STRING:3702.AT5G63380.1SUPFAM:SSF56801
TAIR:AT5G63380TMHMM:TMhelixUniGene:At.27966UniProt:Q84P23
Coordinates (TAIR10) chr5:-:25387581..25390026
Molecular Weight (calculated) 61281.10 Da
IEP (calculated) 8.16
GRAVY (calculated) -0.03
Length 562 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTKTNDSRL IDRSSGFDQR TGIYHSLRPS LSLPPIDQPL SAAEFALSLL LKSSPPATAG KNIEALTYLV NSSSGDNLTY GELLRRVRSL AVSLRERFPS
101: LASRNVAFIL SPSSLDIPVL YLALMSIGVV VSPANPIGSE SEVSHQVEVS EPVIAFATSQ TVKKLQSSSL PLGTVLMDST EFLSWLNRSD SSSVNPFQVQ
201: VNQSDPAAIL FSSGTTGRVK GVLLTHRNLI ASTAVSHQRT LQDPVNYDRV GLFSLPLFHV FGFMMMIRAI SLGETLVLLG RFELEAMFKA VEKYKVTGMP
301: VSPPLIVALV KSELTKKYDL RSLRSLGCGG APLGKDIAER FKQKFPDVDI VQGYGLTESS GPAASTFGPE EMVKYGSVGR ISENMEAKIV DPSTGESLPP
401: GKTGELWLRG PVIMKGYVGN EKASAETVDK EGWLKTGDLC YFDSEDFLYI VDRLKELIKY KAYQVPPVEL EQILHSNPDV IDAAVVPFPD EDAGEIPMAF
501: IVRKPGSNLN EAQIIDFVAK QVTPYKKVRR VAFINAIPKN PAGKILRREL TKIAVDGNAS KL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)