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AT5G63310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:16207701 (2006): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nucleoside diphosphate kinase 2
Curator
Summary (TAIR10)
Maintains intracellular dNTP levels except ATP. Plays a role in response to oxidative stress and UV. Involved in phytochrome-mediated light signaling. Participates in auxin-regulated processes, partly through the modulation of auxin transport. H-bonding with His-197 inside the nucleotide-binding pocket is critical for NDPK2 functioning.
Computational
Description (TAIR10)
nucleoside diphosphate kinase 2 (NDPK2); FUNCTIONS IN: nucleoside diphosphate kinase activity, protein binding, ATP binding; INVOLVED IN: response to UV, auxin mediated signaling pathway, response to hydrogen peroxide, red, far-red light phototransduction; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase, core (InterPro:IPR001564); BEST Arabidopsis thaliana protein match is: Nucleoside diphosphate kinase family protein (TAIR:AT4G09320.1); Has 9088 Blast hits to 8922 proteins in 2598 species: Archae - 291; Bacteria - 4641; Metazoa - 1094; Fungi - 170; Plants - 375; Viruses - 117; Other Eukaryotes - 2400 (source: NCBI BLink).
Protein Annotations
EC:2.7.4.6eggNOG:COG0105eggNOG:KOG0888EMBL:AK227190EnsemblPlants:AT5G63310EnsemblPlants:AT5G63310.1entrez:836451
ExpressionAtlas:Q0WUG9GeneID:836451GO:GO:0004550GO:GO:0005524GO:GO:0006183GO:GO:0006228GO:GO:0006241
Gramene:AT5G63310.1gramene_pathway:2.7.4.6gramene_pathway:DENOVOPURINE3-PWYgramene_pathway:PWY-5687gramene_pathway:PWY0-166HAMAP:MF_00451InterPro:IPR001564
InterPro:IPR023005iPTMnet:Q0WUG9KEGG:00230+2.7.4.6KEGG:00240+2.7.4.6KEGG:ath:AT5G63310KO:K00940OMA:CPKDLAQ
PaxDb:Q0WUG9Pfam:O64903Pfam:PF00334PhylomeDB:Q0WUG9PRIDE:Q0WUG9PRINTS:PR01243PROSITE:PS00469
ProteinModelPortal:Q0WUG9RefSeq:NP_568970.2scanprosite:PS00469SMART:SM00562SMR:Q0WUG9STRING:3702.AT5G63310.1SUPFAM:SSF54919
TAIR:AT5G63310tair10-symbols:ATNDPK2tair10-symbols:NDPK IAtair10-symbols:NDPK IA IAtair10-symbols:NDPK1Atair10-symbols:NDPK2UniGene:At.24504
UniProt:O64903UniProt:Q0WUG9
Coordinates (TAIR10) chr5:-:25372122..25373838
Molecular Weight (calculated) 25551.80 Da
IEP (calculated) 9.30
GRAVY (calculated) -0.21
Length 231 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGATVVSKW TPLCVASPPE RNSASLNPHC SPARVNFRTA LAAFRPQFRL FSRNSASRRR LRASSSAESG IFLPHLVASM EDVEETYIMV KPDGIQRGLV
101: GEIISRFEKK GFKLIGLKMF QCPKELAEEH YKDLSAKSFF PNLIEYITSG PVVCMAWEGV GVVASARKLI GKTDPLQAEP GTIRGDLAVQ TGRNIVHGSD
201: SPENGKREIG LWFKEGELCK WDSALATWLR E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)