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AT5G63200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : tetratricopeptide repeat (TPR)-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1); Has 18351 Blast hits to 10064 proteins in 1197 species: Archae - 736; Bacteria - 8120; Metazoa - 2665; Fungi - 514; Plants - 588; Viruses - 0; Other Eukaryotes - 5728 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0457eggNOG:KOG1124EMBL:AK176456EMBL:AK176469EMBL:CP002688EnsemblPlants:AT5G63200EnsemblPlants:AT5G63200.1
entrez:836441Gene3D:1.25.40.10GeneID:836441Gramene:AT5G63200.1hmmpanther:PTHR23083hmmpanther:PTHR23083:SF343HOGENOM:HOG000005912
InterPro:IPR011990InterPro:IPR013026InterPro:IPR013105InterPro:IPR019734KEGG:ath:AT5G63200OMA:VWNTLGLPfam:PF00515
Pfam:PF07719Pfam:PF13181Pfam:PF13414Pfscan:PS50005Pfscan:PS50293PhylomeDB:Q67YJ9PROSITE:PS50005
PROSITE:PS50293Proteomes:UP000006548RefSeq:NP_201125.2SMART:SM00028SMR:Q67YJ9STRING:3702.AT5G63200.1SUPFAM:SSF48452
TAIR:AT5G63200UniGene:At.43413UniGene:At.8840UniProt:Q67YJ9
Coordinates (TAIR10) chr5:+:25349043..25352899
Molecular Weight (calculated) 71070.70 Da
IEP (calculated) 5.27
GRAVY (calculated) -0.28
Length 649 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRPETIAVK CEPMTVDSPS RPLKLVVLAD LNFNPPETDD LDSSIPIPTP PPITRLSNEE SHQEGGILTC KEVEPGEVEA KKISKVGKCR SRSKIESSSD
101: CGVDADGDLA NQGVPASREE KISNLKMGLI HVARKMPKNA HAHFILGLMF QRLGQSQKAI PEYEKAEEIL LGCEPEIARP ELLLLVQIHH GQCLLLDGFG
201: DTDSVKELEG EELEEILSKL KDSIKLDVRQ AAVWNTLGLM LLKAGCLMSA ISVLSSLLAL VPDNYDCLAN LGVAYLQSGD MELSAKCFQD LVLKDHNHPA
301: ALINYAAELL CKHSSTVAGA GANGGADASE DQKAPMNVAK ECLLAALRSD PKSAHAWVNL ANSYYMMGDH RSSSKCLEKA AKLDPNCMAT RFAVAVQRIK
401: DAERSQDASD QLSWAGNEMA SVIREGESVP IDPPIAWAGL AMAHKAQHEI AAAFVADRNE LTEMEERAVY SLKQAVTEDP EDAVRWHQLG LHSLCSQQYK
501: LSQKYLKAAV GRSRECSYAW SNLGISLQLS DEHSEAEEVY KRALTVSKED QAHAILSNLG NLYRQKKQYE VSKAMFSKAL ELKPGYAPAY NNLGLVFVAE
601: RRWEEAKSCF EKSLEADSLL DAAQSNLLKA TTMSRLCTCF SSSTVVRDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)