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AT5G63190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : MA3 domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MA3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT3G48390.1); Has 1948 Blast hits to 791 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 1230; Fungi - 12; Plants - 571; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQZZeggNOG:KOG0403EMBL:AY039947EMBL:AY142667EMBL:CP002688EnsemblPlants:AT5G63190EnsemblPlants:AT5G63190.1
EnsemblPlants:AT5G63190.2entrez:836440Gene3D:1.25.40.180GeneID:836440GO:GO:0016853Gramene:AT5G63190.1Gramene:AT5G63190.2
hmmpanther:PTHR12626hmmpanther:PTHR12626:SF0IntAct:Q94BR1InterPro:IPR003891InterPro:IPR016021InterPro:IPR016024KEGG:ath:AT5G63190
OMA:EFIRISIPfam:PF02847Pfscan:PS51366PhylomeDB:Q94BR1PROSITE:PS51366Proteomes:UP000006548RefSeq:NP_568968.1
RefSeq:NP_851255.1SMART:SM00544SMR:Q94BR1STRING:3702.AT5G63190.1SUPFAM:SSF48371TAIR:AT5G63190UniGene:At.23418
UniProt:Q94BR1
Coordinates (TAIR10) chr5:+:25346145..25348563
Molecular Weight (calculated) 77560.50 Da
IEP (calculated) 4.84
GRAVY (calculated) -0.24
Length 702 amino acids
Sequence (TAIR10)
(BLAST)
001: MASGEGILTD GQWKKLEIAT HNSGSLSSSP KSHTLFADLN IKSPTGGKGP VAGIPNRHVR RTHSGKHIRV KKEGAGGKGT WGKLLDTDDG DSCIDKNDPN
101: YDSGEDAYDG LVDSPVSDPL NDYKKSVVSI IDEYFSTGDV KVAASDLREL GSSEYHPYFT KRLVSMAMDR HDKEKEMASV LLSALYADVI LPDQIRDGFI
201: RLLRSVDDLA VDILDAVNVL ALFIARAIVD EILPPVFLVR SKKILPESCK GFQVIVTAEK SYLSAPHHAE LVEKKWGGST HTTVEETKKK ISEILKEYVE
301: NGDTYEACRC IRELGVSFFH HEVVKRALVL AMDSPTAESL VLKLLKETAE EGLISSSQMV KGFFRVAESL DDLALDIPSA KKLFDSIVPK AISGGWLDDS
401: FKITSDQDGE KSSQDGKLRQ YKKDTVNIIQ EYFLSDDIPE LIRSLQDLGA PEYNPVFLKR LITLALDRKN REKEMASVLL SALHMELFST EDFINGFIML
501: LESAEDTALD IMDASNELAL FLARAVIDDV LAPLNLEDIS TKLPPKSTGT ETVRSARSLI SARHAGERLL RSWGGGTGWI VEDAKDKISK LLEEYETGGV
601: TSEACQCIRD LGMPFFNHEV VKKALVMAME KQNDRLLNLL EECFGEGLIT TNQMTKGFGR VNDSLDDLSL DIPNAKEKFE LYASHAMDNG WILPEFGISA
701: TQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)