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AT5G63180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G24780.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G63180-MONOMERCAZy:PL1EC:4.2.2.2eggNOG:COG3866eggNOG:ENOG410IPFFEMBL:AB008265EMBL:AY058197
EMBL:CP002688EnsemblPlants:AT5G63180EnsemblPlants:AT5G63180.1entrez:836439Gene3D:2.160.20.10GeneID:836439Genevisible:Q93Z25
GO:GO:0030570GO:GO:0045490GO:GO:0046872Gramene:AT5G63180.1hmmpanther:PTHR31683hmmpanther:PTHR31683:SF28HOGENOM:HOG000237948
InParanoid:Q93Z25InterPro:IPR002022InterPro:IPR011050InterPro:IPR012334InterPro:IPR018082KEGG:00040+4.2.2.2KEGG:ath:AT5G63180
KO:K01728OMA:CCILFSAPaxDb:Q93Z25Pfam:PF00544Pfam:Q93Z25PhylomeDB:Q93Z25PRIDE:Q93Z25
PRINTS:PR00807PRO:PR:Q93Z25ProteinModelPortal:Q93Z25Proteomes:UP000006548RefSeq:NP_568967.1SMART:SM00656SMR:Q93Z25
STRING:3702.AT5G63180.1SUPFAM:SSF51126TAIR:AT5G63180TMHMM:TMhelixUniGene:At.8839UniPathway:UPA00545UniProt:Q93Z25
Coordinates (TAIR10) chr5:-:25341106..25343113
Molecular Weight (calculated) 47897.30 Da
IEP (calculated) 6.88
GRAVY (calculated) -0.39
Length 432 amino acids
Sequence (TAIR10)
(BLAST)
001: MFRPNSLLIP SNLSTTKSQR NTMLNSSYLS FALIFFCCIL FSALASSLPV SDPELVVEEV HRKINESISR RKLGFFSCGS GNPIDDCWRC DKDWEKNRKR
101: LADCGIGFGK NAIGGRDGEI YVVTDPGNDD PVNPRPGTLR YAVIQDEPLW IIFKRDMTIQ LKEELIMNSF KTLDGRGASV HISGGPCITI QYVTNIIIHG
201: LHIHDCKQGG NTYVRDSPEH YGYRTVSDGD GVSIFGGSHV WVDHCSLSNC NDGLIDAIRG STAITISNNY LTHHNKVMLL GHSDTYEQDK NMQVTIAFNH
301: FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSANPTI NSQGNRFLAP DDSSSKEVTK HEDAPEDEWR NWNWRSEGDL LLNGAFFTYS GAGPAKSSSY
401: SKASSLAARP SSHVGEITIA SGALSCKRGS HC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)