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AT5G63030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.985
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30962257 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Thioredoxin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: N-terminal protein myristoylation, cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin subgroup (InterPro:IPR014025), Glutaredoxin, eukaryotic/virial (InterPro:IPR011899), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutaredoxin family protein (TAIR:AT5G40370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:21666eggNOG:COG0695eggNOG:KOG1752EMBL:AB009051
EMBL:AY081257EMBL:AY088825EMBL:AY114565EMBL:CP002688
EnsemblPlants:AT5G63030EnsemblPlants:AT5G63030.1entrez:836423Gene3D:3.40.30.10
GeneID:836423Genevisible:Q8L8T2GO:GO:0005737GO:GO:0009055
GO:GO:0015035GO:GO:0045454Gramene:AT5G63030.1hmmpanther:PTHR10168
hmmpanther:PTHR10168:SF73HOGENOM:HOG000095204InParanoid:Q8L8T2InterPro:IPR002109
InterPro:IPR011899InterPro:IPR012336InterPro:IPR014025iPTMnet:Q8L8T2
KEGG:ath:AT5G63030KO:K03676OMA:VMESNKQPaxDb:Q8L8T2
Pfam:PF00462Pfam:Q8L8T2Pfscan:PS51354PhylomeDB:Q8L8T2
PRIDE:Q8L8T2PRINTS:PR00160PRO:PR:Q8L8T2PROSITE:PS51354
ProteinModelPortal:Q8L8T2Proteomes:UP000006548RefSeq:NP_568962.1SMR:Q8L8T2
STRING:3702.AT5G63030.1SUPFAM:SSF52833TAIR:AT5G63030TIGRfam:TIGR02180
TIGRFAMs:TIGR02180UniGene:At.29018UniProt:Q8L8T2
Coordinates (TAIR10) chr5:+:25286352..25287517
Molecular Weight (calculated) 13611.40 Da
IEP (calculated) 5.16
GRAVY (calculated) -0.13
Length 125 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSMFSGNRM SKEEMEVVVN KAKEIVSAYP VVVFSKTYCG YCQRVKQLLT QLGATFKVLE LDEMSDGGEI QSALSEWTGQ TTVPNVFIKG NHIGGCDRVM
101: ETNKQGKLVP LLTEAGAIAD NSSQL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)