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AT5G63010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.904
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G32950.1); Has 4234 Blast hits to 3983 proteins in 322 species: Archae - 2; Bacteria - 280; Metazoa - 1738; Fungi - 841; Plants - 754; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111MMJeggNOG:KOG0280EMBL:AB009051EMBL:CP002688
EnsemblPlants:AT5G63010EnsemblPlants:AT5G63010.1entrez:836421Gene3D:2.130.10.10
GeneID:836421GO:GO:0080008Gramene:AT5G63010.1hmmpanther:PTHR22850
HOGENOM:HOG000240907InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986
InterPro:IPR019775KEGG:ath:AT5G63010KO:K17868OMA:ILDMKWL
Pfam:PF00400Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q9FM51
PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294Proteomes:UP000006548
RefSeq:NP_201106.1scanprosite:PS00678SMART:SM00320SMR:Q9FM51
STRING:3702.AT5G63010.1SUPFAM:SSF50978TAIR:AT5G63010UniGene:At.43098
UniGene:At.49209UniGene:At.68259UniProt:Q9FM51
Coordinates (TAIR10) chr5:+:25281739..25282967
Molecular Weight (calculated) 37535.50 Da
IEP (calculated) 4.45
GRAVY (calculated) -0.25
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAADCYLEG NADAVEFCPH ESYANLLAAS TYTLQEGDCP SRSGSVYLFD VGDVEDVGLN LIQKIDTAGV FDIRWSRGGD GGDVALAQAD ADGCLIVYKI
101: DETESKGTLR EVSGKRISSS MCLCLDWDPS STSIVVGLSD GSASVVSFTD SNLETVQEWK GHDFELWTAS FDLNNPNLVY TGSDDCKFSC WDIRDSPADN
201: RVFQNSKVHT MGVCCISSNP SDPYSIFTGS YDETLRVWDT RSVSRPLNET SVSLGGGVWR IKHHPSLSGV VLAACMHNGF ALAKVSDGKG EVLESYNKHH
301: SLAYGADWYR GKDQKQSVVA TCSFYDRLLR VWMPITDFST RCS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)