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AT5G62890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.704
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26748395 (2016): plant-type vacuole plant-type vacuole membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:21433285 (2011): plasma membrane
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Xanthine/uracil permease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: cell wall, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: Xanthine/uracil permease family protein (TAIR:AT5G49990.1); Has 9339 Blast hits to 9322 proteins in 1919 species: Archae - 67; Bacteria - 7633; Metazoa - 348; Fungi - 130; Plants - 461; Viruses - 1; Other Eukaryotes - 699 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2039-MONOMERBioCyc:ARA:GQT-2717-MONOMERBioCyc:ARA:GQT-2718-MONOMERBioCyc:ARA:GQT-2719-MONOMERBioGrid:21652eggNOG:COG2233eggNOG:KOG1292
EMBL:AB009053EMBL:AF466198EMBL:AY035003EMBL:CP002688EnsemblPlants:AT5G62890EnsemblPlants:AT5G62890.1EnsemblPlants:AT5G62890.2
EnsemblPlants:AT5G62890.3entrez:836409ExpressionAtlas:Q27GI3GeneID:836409Genevisible:Q27GI3GO:GO:0005215GO:GO:0005618
GO:GO:0005773GO:GO:0005783GO:GO:0009506GO:GO:0016021GO:GO:0055085hmmpanther:PTHR11119hmmpanther:PTHR11119:SF48
HOGENOM:HOG000038202InParanoid:Q27GI3InterPro:IPR006043iPTMnet:Q27GI3KEGG:ath:AT5G62890OMA:HTSGRWFPANTHER:PTHR11119
PaxDb:Q27GI3Pfam:PF00860Pfam:Q27GI3PhylomeDB:Q27GI3PRIDE:Q27GI3PRO:PR:Q27GI3ProteinModelPortal:Q27GI3
Proteomes:UP000006548Reactome:R-ATH-196836RefSeq:NP_001032127.2RefSeq:NP_001078782.1RefSeq:NP_201094.1RefSeq:NP_851251.2SMR:Q27GI3
STRING:3702.AT5G62890.1TAIR:AT5G62890TMHMM:TMhelixUniGene:At.8485UniProt:Q27GI3
Coordinates (TAIR10) chr5:+:25243723..25247075
Molecular Weight (calculated) 57583.40 Da
IEP (calculated) 9.66
GRAVY (calculated) 0.46
Length 532 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGGGAPAPK ADEPQPHPPK DQLPNISYCI TSPPPWPEAI LLGFQHYLVM LGTTVLIPTA LVPQMGGGYE EKAKVIQTIL FVAGINTLLQ TLFGTRLPAV
101: VGASYTFVPT TISIILSGRF SDTSNPIDRF ERIMRATQGA LIVASTLQMI LGFSGLWRNV VRFLSPISAV PLVGLVGFGL YEFGFPGVAK CIEIGLPELL
201: ILVFVSQYLP HVIKSGKNVF DRFAVIFAVV IVWIYAHLLT VGGAYNGAAP TTQTSCRTDR AGIIGAAPWI RVPWPFQWGA PSFDAGEAFA MMMASFVALV
301: ESTGAFVAVS RYASATMLPP SILSRGIGWQ GVAILISGLF GTGAGSSVSV ENAGLLALTR VGSRRVVQIA AGFMIFFSIL GKFGAVFASI PAPIIAALYC
401: LFFAYVGAGG LSFLQFCNLN SFRTKFILGF SVFLGLSIPQ YFNEYTAIKG YGPVHTGARW FNDMVNVPFS SEPFVAGSVA FFLDNTLHKK DSSIRKDRGK
501: HWWDKFRSFK GDTRSEEFYS LPFNLNKYFP SV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)