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AT5G62880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RAC-like 10
Curator
Summary (TAIR10)
A member of ROP GTPase gene family.
Computational
Description (TAIR10)
RAC-like 10 (RAC10); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras small GTPase, Rab type (InterPro:IPR003579), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: RHO-related protein from plants 10 (TAIR:AT3G48040.1); Has 24116 Blast hits to 24088 proteins in 664 species: Archae - 8; Bacteria - 52; Metazoa - 12643; Fungi - 3430; Plants - 2696; Viruses - 20; Other Eukaryotes - 5267 (source: NCBI BLink).
Protein Annotations
BioGrid:21651DIP:DIP-39043NeggNOG:COG1100eggNOG:KOG0393EMBL:AB009053EMBL:AF079485EMBL:AF115467
EMBL:BT002997EMBL:BT004459EMBL:CP002688EnsemblPlants:AT5G62880EnsemblPlants:AT5G62880.1entrez:836408ExpressionAtlas:O82481
Gene3D:3.40.50.300GeneID:836408Genevisible:O82481GO:GO:0005525GO:GO:0005634GO:GO:0005737GO:GO:0005856
GO:GO:0005886GO:GO:0007264GO:GO:0009531GO:GO:0009664GO:GO:0009788GO:GO:0019901GO:GO:0019903
Gramene:AT5G62880.1hmmpanther:PTHR24072hmmpanther:PTHR24072:SF149HOGENOM:HOG000233974InParanoid:O82481IntAct:O82481InterPro:IPR001806
InterPro:IPR005225InterPro:IPR027417KEGG:ath:AT5G62880KO:K04392MINT:MINT-8342660OMA:PEPQKRHPaxDb:O82481
PaxDb:Q67XC6Pfam:O82481Pfam:PF00071Pfscan:PS51420PhylomeDB:O82481PIR:T51824PRIDE:O82481
PRO:PR:O82481PROSITE:PS51420ProteinModelPortal:O82481Proteomes:UP000006548RefSeq:NP_201093.1SMR:O82481STRING:3702.AT5G62880.1
SUPFAM:SSF52540TAIR:AT5G62880tair10-symbols:ARAC10tair10-symbols:ATRAC10tair10-symbols:ATROP11tair10-symbols:RAC10TIGRfam:TIGR00231
TIGRFAMs:TIGR00231UniGene:At.16939UniProt:O82481UniProt:Q67XC6
Coordinates (TAIR10) chr5:+:25237236..25238939
Molecular Weight (calculated) 23879.90 Da
IEP (calculated) 9.64
GRAVY (calculated) -0.22
Length 215 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSASKFIK CVTVGDGAVG KTCMLICYTS NKFPTDYIPT VFDNFSANVV VEGTTVNLGL WDTAGQEDYN RLRPLSYRGA DVFVLSFSLV SRASYENVFK
101: KWIPELQHFA PGVPLVLVGT KLDLREDKHY LADHPGLSPV TTAQGEELRK LIGATYYIEC SSKTQQNVKA VFDSAIKEVI KPLVKQKEKT KKKKKQKSNH
201: GCLSNVLCGR IVTRH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)