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AT5G62860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.419
mitochondrion 0.328
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box associated ubiquitination effector family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G32420.1); Has 451 Blast hits to 435 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 451; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EnsemblPlants:AT5G62860EnsemblPlants:AT5G62860.1entrez:836407GeneID:836407Gramene:AT5G62860.1hmmpanther:PTHR31790
hmmpanther:PTHR31790:SF10InParanoid:F4K7U3InterPro:IPR013187InterPro:IPR017451KEGG:ath:AT5G62860PaxDb:F4K7U3Pfam:PF08268
PRIDE:F4K7U3Proteomes:UP000006548RefSeq:NP_201092.2TAIR:AT5G62860TIGRfam:TIGR01640TIGRFAMs:TIGR01640UniGene:At.75268
UniGene:At.8484UniProt:F4K7U3
Coordinates (TAIR10) chr5:+:25232632..25233541
Molecular Weight (calculated) 25687.90 Da
IEP (calculated) 7.13
GRAVY (calculated) -0.53
Length 218 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRGRQEKKT SRSPKRRQQR QNEISERENS NGIHIPFDVI TDILSRLPVK SLVKHDRWSN SCDGLFGYDP VEKQVFTLVG GPMKQQWRSL DIQGIWNHSP
101: EARSSGLCIK EFIYYIAHVE SWDDPEFYEL VRFDVRHESF DRIQMPITLQ MNQQLSEVSF DELTLVNYQG KLGCIRYTKA SAEMWIMEDH IEQQEWSKMM
201: IFEKLGIASL VSVLMVRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)