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AT5G62830.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box associated ubiquitination effector family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G17560.1); Has 876 Blast hits to 855 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 874; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EnsemblPlants:AT5G62830EnsemblPlants:AT5G62830.1entrez:836404
GeneID:836404Gramene:AT5G62830.1hmmpanther:PTHR32133hmmpanther:PTHR32133:SF82
InterPro:IPR006527InterPro:IPR017451KEGG:ath:AT5G62830OMA:DGHACAS
PaxDb:F4K7U0Pfam:PF07734Proteomes:UP000006548RefSeq:NP_201089.1
STRING:3702.AT5G62830.1TAIR:AT5G62830TIGRfam:TIGR01640TIGRFAMs:TIGR01640
UniGene:At.65700UniProt:F4K7U0
Coordinates (TAIR10) chr5:-:25226168..25226782
Molecular Weight (calculated) 23977.40 Da
IEP (calculated) 5.09
GRAVY (calculated) -0.22
Length 204 amino acids
Sequence (TAIR10)
(BLAST)
001: MEMYEFTSNS WRNLDVIIPD QAYLKCDGHA CASLSGNTYW VSWIEKGDND DYSLLSFDFS TERFQRLCAH FHHQPCRVDT IALSVVREEH LSLFYQSRQT
101: LKVEIWVTVE IETTFVSWSK FLTLDLVSPC LSRSMSFYIL DEEKKIVVCC DESENFYYSK LVWIAREGQE YRPSPDKSVF CGIQAAHFQC YRCIPRLFGY
201: VPKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)