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AT5G62770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF1645)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1645); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1645) (TAIR:AT1G70420.1); Has 173 Blast hits to 173 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 161; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXS0eggNOG:ENOG410YQM1EMBL:AB009053EMBL:BT020382EMBL:BT020506EMBL:CP002688EnsemblPlants:AT5G62770
EnsemblPlants:AT5G62770.1entrez:836398GeneID:836398Gramene:AT5G62770.1hmmpanther:PTHR33095hmmpanther:PTHR33095:SF10IntAct:Q9FM16
InterPro:IPR012442KEGG:ath:AT5G62770OMA:KSHSAGFPfam:PF07816PhylomeDB:Q9FM16Proteomes:UP000006548RefSeq:NP_201083.1
STRING:3702.AT5G62770.1TAIR:AT5G62770UniGene:At.29034UniProt:Q9FM16
Coordinates (TAIR10) chr5:+:25210564..25211370
Molecular Weight (calculated) 29994.40 Da
IEP (calculated) 5.47
GRAVY (calculated) -1.00
Length 268 amino acids
Sequence (TAIR10)
(BLAST)
001: MQTSRLLSFS SNSPSFGSFS SAVDLAAIAA RVVEEFRDHD QTQSDSSPHR DDDNDSDFAF DCPSNTCSQP LATADEIFCN GQIRPLNPYG GNAPVESQPT
101: SKITTLPPRR RRPALRKLMS EDRDPASNSS SEAEEDLTGV PPETYCVWKP KQSNSGDDDL QRLSSSPSHS KIKSHSAGFS KRWKLRNLLY VRSSSEGNDK
201: LVFPAPVKKN DETVSDQREE EEPPSKVDGE EEGREREETK RQTYVPYRKD MIGILKNVNG LSRHLRPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)