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AT5G62720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integral membrane HPP family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Integral membrane HPP family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HPP (InterPro:IPR007065); BEST Arabidopsis thaliana protein match is: Integral membrane HPP family protein (TAIR:AT3G47980.1); Has 1507 Blast hits to 1507 proteins in 452 species: Archae - 0; Bacteria - 819; Metazoa - 0; Fungi - 49; Plants - 59; Viruses - 0; Other Eukaryotes - 580 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJRYeggNOG:ENOG4111S0MEMBL:AK117207EMBL:BT030052
EMBL:CP002688EnsemblPlants:AT5G62720EnsemblPlants:AT5G62720.1entrez:836393
ExpressionAtlas:Q8GZ51GeneID:836393GO:GO:0009706GO:GO:0009941
GO:GO:0016021Gramene:AT5G62720.1hmmpanther:PTHR33741HOGENOM:HOG000083617
InterPro:IPR007065KEGG:ath:AT5G62720OMA:CYLKENMPfam:PF04982
PhylomeDB:Q8GZ51Proteomes:UP000006548RefSeq:NP_201078.1STRING:3702.AT5G62720.1
TAIR:AT5G62720TMHMM:TMhelixUniGene:At.27613UniProt:Q8GZ51
Coordinates (TAIR10) chr5:+:25191969..25194845
Molecular Weight (calculated) 25828.90 Da
IEP (calculated) 10.73
GRAVY (calculated) 0.52
Length 243 amino acids
Sequence (TAIR10)
(BLAST)
001: MASVPVRPLP LLRRNITSTT ASKSSPMLAN VSSRHSLGIS TYDEFLKQIK TPATVNHRRR VSTVVASAGN LTAPSWDSWK PDKTAAATAL LLSDVIWPAA
101: GAFAAMALLG RMDQMLSPKG ISMSVAPLGA VSAILFITPS APAARKYNIF LAQIGCAAIG VVAFSVFGPG WLARSVALAA SIAFMVITRA NHPPAASLPL
201: MFIDGAKFHH LNFWYALFPG AAACVILCLL QSIVCYLKEN MKF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)