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AT5G62690.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30447334 (2019): plasma membrane
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:24012629 (2013): nucleus
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : tubulin beta chain 2
Curator
Summary (TAIR10)
encodes tubulin beta-2/beta-3 chain
Computational
Description (TAIR10)
tubulin beta chain 2 (TUB2); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: response to cadmium ion, response to salt stress, response to cold; LOCATED IN: tubulin complex, nucleolus, cell wall, plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 3 (TAIR:AT5G62700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:21633BioGrid:21634eggNOG:COG5023eggNOG:KOG1375
EMBL:AB020751EMBL:AK117431EMBL:AK221201EMBL:AY056411
EMBL:AY062614EMBL:AY062742EMBL:AY087859EMBL:AY128785
EMBL:BT002587EMBL:CP002688EMBL:M84700EnsemblPlants:AT5G62690
EnsemblPlants:AT5G62690.1EnsemblPlants:AT5G62700.1entrez:836390entrez:836391
ExpressionAtlas:Q56YW9Gene3D:1.10.287.600Gene3D:3.30.1330.20Gene3D:3.40.50.1440
GeneID:836390GeneID:836391Genevisible:Q56YW9GO:GO:0003924
GO:GO:0005200GO:GO:0005525GO:GO:0005737GO:GO:0005874
GO:GO:0007017Gramene:AT5G62690.1Gramene:AT5G62700.1hmmpanther:PTHR11588
hmmpanther:PTHR11588:SF109InParanoid:Q56YW9IntAct:Q56YW9InterPro:IPR000217
InterPro:IPR002453InterPro:IPR003008InterPro:IPR008280InterPro:IPR013838
InterPro:IPR017975InterPro:IPR018316InterPro:IPR023123iPTMnet:Q56YW9
KEGG:ath:AT5G62690KEGG:ath:AT5G62700KO:K07375ncoils:Coil
PANTHER:PTHR11588PaxDb:Q56YW9Pfam:PF00091Pfam:PF03953
Pfam:Q56YW9Pfam:Q9ASR0PhylomeDB:Q56YW9PIR:JQ1587
PRIDE:Q56YW9PRINTS:PR01161PRINTS:PR01163PRO:PR:Q56YW9
PROSITE:PS00227PROSITE:PS00228ProteinModelPortal:Q56YW9Proteomes:UP000006548
RefSeq:NP_568959.1RefSeq:NP_568960.1scanprosite:PS00227scanprosite:PS00228
SMART:SM00864SMART:SM00865SMR:Q56YW9STRING:3702.AT5G62700.1
SUPFAM:SSF52490SUPFAM:SSF55307TAIR:AT5G62690tair10-symbols:TUB2
UniGene:At.24202UniGene:At.49208UniProt:Q56YW9UniProt:Q9ASR0
Coordinates (TAIR10) chr5:+:25181560..25183501
Molecular Weight (calculated) 50736.80 Da
IEP (calculated) 4.43
GRAVY (calculated) -0.42
Length 450 amino acids
Sequence (TAIR10)
(BLAST)
001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DPTGRYTGDS DLQLERINVY YNEASCGRFV PRAVLMDLEP GTMDSLRSGP YGQTFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRSLTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGDYEDEE EGEYQQEEEY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)