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AT5G62560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.991
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein with ARM repeat domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein with ARM repeat domain; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PLANT U-BOX 39 (TAIR:AT3G47820.1); Has 4205 Blast hits to 2838 proteins in 224 species: Archae - 0; Bacteria - 12; Metazoa - 617; Fungi - 508; Plants - 2679; Viruses - 0; Other Eukaryotes - 389 (source: NCBI BLink).
Protein Annotations
BioGrid:21620EC:6.3.2.-eggNOG:ENOG410IIQVeggNOG:ENOG4111IM2
EMBL:AB015469EMBL:AK227203EMBL:AY128369EMBL:BT000351
EMBL:CP002688EnsemblPlants:AT5G62560EnsemblPlants:AT5G62560.1entrez:836376
Gene3D:1.25.10.10Gene3D:3.30.40.10GeneID:836376GO:GO:0004842
GO:GO:0016874Gramene:AT5G62560.1hmmpanther:PTHR23315hmmpanther:PTHR23315:SF98
HOGENOM:HOG000239874InParanoid:Q0WUF6InterPro:IPR000225InterPro:IPR003613
InterPro:IPR011989InterPro:IPR013083InterPro:IPR016024iPTMnet:Q0WUF6
KEGG:ath:AT5G62560OMA:TDIFDHEPaxDb:Q0WUF6Pfam:PF00514
Pfam:PF04564Pfam:Q0WUF6Pfscan:PS50176Pfscan:PS51698
PhylomeDB:Q0WUF6PRIDE:Q0WUF6PRO:PR:Q0WUF6PROSITE:PS50176
PROSITE:PS51698ProteinModelPortal:Q0WUF6Proteomes:UP000006548RefSeq:NP_201062.1
SMART:SM00185SMART:SM00504SMR:Q0WUF6SUPFAM:SSF48371
SUPFAM:SSF57850TAIR:AT5G62560UniGene:At.29043UniPathway:UPA00143
UniProt:Q0WUF6
Coordinates (TAIR10) chr5:+:25110073..25111752
Molecular Weight (calculated) 60467.70 Da
IEP (calculated) 5.55
GRAVY (calculated) -0.27
Length 559 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGNKQRWFS FHQRSSSATT TTLPQHKHDE TPPEFLCPIT GFLMSDPVVV SSGQTFERLS VQVCRNLGYI PDLLDGTRPD LSTVIPNLAM KSTIFSWCDR
101: QKVDHPRPPD AAYVEGVVRA RMDKDPNPSP GQSPGPGDKD PEPEILPPVE ENSPSDYDAV MEAIRARSKN SMSPTTSLES VTIGQSSYHP VRAVSMFSSS
201: TTSSSSGVFA GADSPFRNAM SFSSTDHSSS PMSPEEEEIF NKLRGTDIFD HEQGLILLRK MTRSSEDLRV SLCTDRILSF LRSLLVSRYN LVQTNAAASV
301: VNLSLEKQNK VKIVRSGFVP LLIDVLKSGT TEAQEHVAGA LFSLALEDEN KMVIGVLGAV EPLLHALRSS ESERARQDAA LALYHLSLIP SNRTRLVRAG
401: AVPTLLSMVR SGDSTSRILL VLCNLAACPD GKGAMLDGNA VAILVGKLRE VGGGDSEAAR ENCVAVLLTL CQGNLRFRGL ASEAGAEEVL MEVEENGNER
501: VKEKASKILL AMRGGGGGES EFGENAEARE WNRMLEATGL SRTQFQGGQN GGFAYSSQF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)