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AT5G62540.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-conjugating enzyme 3
Curator
Summary (TAIR10)
Encodes a protein predicted to be an E2 ubiquitin conjugating enzyme. It appears homologous to the RAD6 protein in yeast implicated in histone ubiquitination, but, UBC3 has not been experimentally associated with this process.
Computational
Description (TAIR10)
ubiquitin-conjugating enzyme 3 (UBC3); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquiting-conjugating enzyme 2 (TAIR:AT2G02760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G62540-MONOMEREC:2.3.2.23eggNOG:COG5078eggNOG:KOG0419
EMBL:AB015469EMBL:AY039851EMBL:AY048267EMBL:AY085367
EMBL:AY143805EMBL:CP002688EMBL:DQ027018EMBL:L19352
EnsemblPlants:AT5G62540EnsemblPlants:AT5G62540.1entrez:836374Gene3D:3.10.110.10
GeneID:836374Genevisible:P42746GO:GO:0000209GO:GO:0004842
GO:GO:0005524GO:GO:0005737GO:GO:0006281GO:GO:0006511
GO:GO:0016574GO:GO:0031625GO:GO:0043161GO:GO:0061630
Gramene:AT5G62540.1HOGENOM:HOG000233454InParanoid:P42746InterPro:IPR000608
InterPro:IPR016135InterPro:IPR023313KEGG:ath:AT5G62540KO:K10573
OMA:CDPNPDSPaxDb:P42746Pfam:P42746Pfam:PF00179
Pfscan:PS50127PhylomeDB:P42746PIR:S43782PRIDE:P42746
PRO:PR:P42746PROSITE:PS00183PROSITE:PS50127ProteinModelPortal:P42746
Proteomes:UP000006548RefSeq:NP_568956.1scanprosite:PS00183SMR:P42746
STRING:3702.AT5G62540.1SUPFAM:SSF54495TAIR:AT5G62540tair10-symbols:UBC3
UniGene:At.29044UniGene:At.332UniPathway:UPA00143UniProt:P42746
Coordinates (TAIR10) chr5:+:25104679..25105465
Molecular Weight (calculated) 17137.40 Da
IEP (calculated) 5.66
GRAVY (calculated) -0.42
Length 150 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTPAKKRLM WDFKRLQKDP PVGISGAPQD NNIMHWNALI FGPEDTPWDG GTFKLTLHFT EDYPNKPPIV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAVLTSIQ SLLCDPNPDS PANAEAARLF SENKREYNRK VIEIVEQSYV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)