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AT5G62460.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.992
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/FYVE/PHD zinc finger superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G47550.6); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5183eggNOG:KOG1609EMBL:AB015469EMBL:AY060581EMBL:AY142052EMBL:CP002688EnsemblPlants:AT5G62460
EnsemblPlants:AT5G62460.1entrez:836366Gene3D:3.30.40.10GeneID:836366GO:GO:0008270GO:GO:0016021Gramene:AT5G62460.1
hmmpanther:PTHR23012hmmpanther:PTHR23012:SF96HOGENOM:HOG000238177InterPro:IPR011016InterPro:IPR013083InterPro:IPR022143InterPro:IPR033275
KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT5G62460OMA:RRGGLHFPANTHER:PTHR23012Pfam:PF12428
Pfam:PF12906Pfscan:PS51292PhylomeDB:Q9FJJ6PROSITE:PS51292Proteomes:UP000006548RefSeq:NP_568953.1SMART:SM00744
SMR:Q9FJJ6STRING:3702.AT5G62460.1SUPFAM:SSF57850TAIR:AT5G62460TMHMM:TMhelixUniGene:At.21229unipathway:UPA00143
UniProt:Q9FJJ6
Coordinates (TAIR10) chr5:+:25075545..25077072
Molecular Weight (calculated) 33661.90 Da
IEP (calculated) 4.42
GRAVY (calculated) -0.58
Length 307 amino acids
Sequence (TAIR10)
(BLAST)
001: MADDQSSSTD RLVKPESLNS DRGSNQSIES SGESSRAQGS TSLSTTKSMD GKKTEEEETT EQRDVDDEEE PLIQSVECRI CQEEDSVKNL ESPCSCSGSL
101: KYAHRKCVQR WCNEKGDTTC EICHKSYQPG YTAPPPPPAD DTIIDIGEDW GNGVHLDLND PRILAMAAAE RHFFDADYDE YADSNSSGAA FCRSAALILM
201: ALLLLRHALN LTNNNSDDEE DDPSAFFFLF MLRAAGFLLP CYIMAWAISI LQRRRQRQEA AALAAAEVAF MLHSGGGGGG QRRGGLHFAV PPELISNPHH
301: QPEASPQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)