AT5G62440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3223) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nucleologenesis, regulation of cell division, embryo development; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3223 (InterPro:IPR021602); Has 1122 Blast hits to 800 proteins in 144 species: Archae - 2; Bacteria - 150; Metazoa - 333; Fungi - 187; Plants - 279; Viruses - 3; Other Eukaryotes - 168 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:25072620..25073917 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 22546.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.74 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.94 | ||||||||||||||||||||||||||||||||||||
| Length | 202 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEEQEIVDS LSAEVNPDQK VDMEVETATP KAETGDEKRE REETEEEENG GESKKQKVGE EEKSGPVKLG PKEFVTSVAM FDYFVKFLHF WPTDLDVNKY 101: EHMVLLDLIK KGHSEPEKKI GGGIKTFQVR THPMWKSRCF FLVREDDTAD DFSFRKCVDQ ILPLPENMKT PGANGNGHGG GRGGGGGRRG GRGGGRGGRF 201: RR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)