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AT5G62410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.946
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : structural maintenance of chromosomes 2
Curator
Summary (TAIR10)
SMC2-1 (SMC2)
Computational
Description (TAIR10)
structural maintenance of chromosomes 2 (SMC2); FUNCTIONS IN: transporter activity; INVOLVED IN: chromosome organization; LOCATED IN: condensin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: Structural maintenance of chromosomes (SMC) family protein (TAIR:AT3G47460.1); Has 126046 Blast hits to 65003 proteins in 3391 species: Archae - 1784; Bacteria - 23628; Metazoa - 52968; Fungi - 10094; Plants - 6737; Viruses - 431; Other Eukaryotes - 30404 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1196eggNOG:KOG0933EMBL:AB015469EMBL:AB019235EMBL:AF271730EMBL:AF271731EMBL:AF306547
EMBL:CP002688EnsemblPlants:AT5G62410EnsemblPlants:AT5G62410.1entrez:836362Gene3D:3.40.50.300GeneID:836362Genevisible:Q9C5Y4
GO:GO:0000796GO:GO:0005215GO:GO:0005524GO:GO:0005634GO:GO:0006810GO:GO:0007076GO:GO:0051301
GO:GO:0051321Gramene:AT5G62410.1hmmpanther:PTHR18937hmmpanther:PTHR18937:SF9HOGENOM:HOG000163792InParanoid:Q9C5Y4InterPro:IPR003395
InterPro:IPR010935InterPro:IPR024704InterPro:IPR027120InterPro:IPR027417iPTMnet:Q9C5Y4KEGG:ath:AT5G62410KO:K06674
ncoils:CoilOMA:CQNGKIPPANTHER:PTHR18937:SF9PaxDb:Q9C5Y4Pfam:PF02463Pfam:PF06470Pfam:Q9C5Y4
PhylomeDB:Q9C5Y4PIRSF:PIRSF005719PRIDE:Q9C5Y4PRO:PR:Q9C5Y4ProteinModelPortal:Q9C5Y4Proteomes:UP000006548Reactome:R-ATH-2299718
Reactome:R-ATH-2514853RefSeq:NP_201047.1SMART:SM00968SMR:Q9C5Y4STRING:3702.AT5G62410.1SUPFAM:0038317SUPFAM:SSF52540
SUPFAM:SSF75553TAIR:AT5G62410tair10-symbols:ATCAP-E1tair10-symbols:ATSMC4tair10-symbols:SMC2tair10-symbols:TTN3UniGene:At.19029
UniProt:Q9C5Y4
Coordinates (TAIR10) chr5:+:25056308..25062436
Molecular Weight (calculated) 132608.00 Da
IEP (calculated) 6.69
GRAVY (calculated) -0.59
Length 1175 amino acids
Sequence (TAIR10)
(BLAST)
0001: MHIKEICLEG FKSYATRTVV SGFDPHFNAI TGLNGSGKSN ILDSICFVLG ITNLQQVRAA NLQELVYKQG QAGITKATVS VTFDNSERHR SPLGYEEHPE
0101: ITVTRQIVVG GRNKYLINGK LAQPSQVQNL FHSVQLNVNN PHFLIMQGRI TKVLNMKPPE ILSMLEEAAG TRMYENKKEA ALKTLEKKQT KVDEINKLLD
0201: HEILPALEKL RKEKSQYMQW ANGNAELDRL RRFCIAFEYV QAEKIRDNAV LGVGEMKAKL GKIDAETEKT QEEIQEFEKQ IKALTQAKEA SMGGEVKTLS
0301: EKVDSLAQEM TRESSKLNNK EDTLLGEKEN VEKIVHSIED LKKSVKERAA AVKKSEEGAA DLKQRFQELS TTLEECEKEH QGVLAGKSSG DEEKCLEDQL
0401: RDAKIAVGTA GTELKQLKTK IEHCEKELKE RKSQLMSKLE EAIEVENELG ARKNDVEHVK KALESIPYNE GQMEALEKDR GAELEVVQRL EDKVRGLSAQ
0501: LANFQFTYSD PVRNFDRSKV KGVVAKLIKV KDRSSMTALE VTAGGKLYDV VVDSEDTGKQ LLQNGALRRR VTIIPLNKIQ SYVVQPRVQQ ATARLVGKDN
0601: AELALSLVGY SDELKNAMEY VFGSTFVCKT TDVAKEVAFN RDIRTPSVTL EGDIFQPSGL LTGGSRKGGG DRLRKLHDLA EAESELQGHQ KRLADVESQI
0701: KELQPLQMKF TDVYAQLELK TYDLSLFLKR AEQNEHHKLG EAVKKLEEEL EEAKSQIKEK ELAYKNCFDA VSKLENSIKD HDKNREGRLK DLEKNIKTIK
0801: AQMQAASKDL KSHENEKEKL VMEEEAMKQE QSSLESHLTS LETQISTLTS EVDEQRAKVD ALQKIHDESL AELKLIHAKM KECDTQISGF VTDQEKCLQK
0901: LSDMKLERKK LENEVVRMET DHKDCSVKVD KLVEKHTWIA SEKQLFGKGG TDYDFESCDP YVAREKLEKL QSDQSGLEKR VNKKVMAMFE KAEDEYNALI
1001: SKKNTIENDK SKITKVIEEL DEKKKETLKV TWVKVNQDFG SIFSTLLPGT MAKLEPPEDG NFLDGLEVRV AFGKVWKQSL SELSGGQRSL LALSLILALL
1101: LFKPAPLYIL DEVDAALDLS HTQNIGRMIR AHFPHSQFIV VSLKEGMFNN ANVLFRTKFV DGVSTVQRTV TKQTK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)