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AT5G62320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 99
Curator
Summary (TAIR10)
Encodes a putative transcription factor (MYB99).
Computational
Description (TAIR10)
myb domain protein 99 (MYB99); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 85 (TAIR:AT4G22680.1); Has 7988 Blast hits to 7535 proteins in 425 species: Archae - 0; Bacteria - 0; Metazoa - 531; Fungi - 261; Plants - 5721; Viruses - 3; Other Eukaryotes - 1472 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AB019235EMBL:AF199026EMBL:AY519644EMBL:CP002688EMBL:DQ447105
EnsemblPlants:AT5G62320EnsemblPlants:AT5G62320.1entrez:836353Gene3D:1.10.10.60GeneID:836353GO:GO:0003677GO:GO:0003700
GO:GO:0006355Gramene:AT5G62320.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF633InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930
KEGG:ath:AT5G62320KO:K09422OMA:EDLELGCPfam:PF00249Pfscan:PS51294PhylomeDB:Q9SNW9PROSITE:PS51294
Proteomes:UP000006548RefSeq:NP_201038.1SMART:SM00717SMR:Q9SNW9STRING:3702.AT5G62320.1SUPFAM:SSF46689TAIR:AT5G62320
tair10-symbols:ATMYB99tair10-symbols:ATMYBCU15tair10-symbols:MYB99UniGene:At.8938UniProt:Q9SNW9
Coordinates (TAIR10) chr5:-:25028885..25029786
Molecular Weight (calculated) 27357.30 Da
IEP (calculated) 4.94
GRAVY (calculated) -0.58
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGRKPCCDE VGLRKGPWTV EEDGKLVDFL RARGNCGGGG GGWCWRDVPK LAGLRRCGKS CRLRWTNYLR PDLKRGLFTE EEIQLVIDLH ARLGNRWSKI
101: AVELPGRTDN DIKNYWNTHI KRKLIRMGID PNTHRRFDQQ KVNEEETILV NDPKPLSETE VSVALKNDTS AVLSGNLNQL ADVDGDDQPW SFLMENDEGG
201: GGDAAGELTM LLSGDITSSC SSSSSLWMKY GEFGYEDLEL GCFDV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)